Miyakogusa Predicted Gene

Lj0g3v0112319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0112319.1 Non Chatacterized Hit- tr|D7TTF9|D7TTF9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,67.92,0.000000000002, ,CUFF.6512.1
         (58 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57770.1 | Symbols:  | Protein kinase superfamily protein | c...    56   5e-09
AT1G16820.1 | Symbols:  | vacuolar ATP synthase catalytic subuni...    52   8e-08

>AT3G57770.1 | Symbols:  | Protein kinase superfamily protein |
          chr3:21397542-21398421 FORWARD LENGTH=269
          Length = 269

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/30 (83%), Positives = 28/30 (93%)

Query: 16 LTHISDIKLIRTDTTLDLSQKAEKGMLLTL 45
          + HISDIKLIRTDTTLDLSQKAEKGM+ T+
Sbjct: 1  MAHISDIKLIRTDTTLDLSQKAEKGMIWTM 30


>AT1G16820.1 | Symbols:  | vacuolar ATP synthase catalytic
          subunit-related / V-ATPase-related / vacuolar proton
          pump-related | chr1:5757199-5758464 REVERSE LENGTH=93
          Length = 93

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 25/26 (96%)

Query: 16 LTHISDIKLIRTDTTLDLSQKAEKGM 41
          + HISDIKLIRTDTTLDLSQKAEKGM
Sbjct: 1  MAHISDIKLIRTDTTLDLSQKAEKGM 26