Miyakogusa Predicted Gene

Lj0g3v0112089.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0112089.2 tr|D7M1V6|D7M1V6_ARALL Thioredoxin family protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_,60.47,4e-19,seg,NULL; GLUTAREDOXIN_2,Glutaredoxin;
GLUTAREDOXIN-3,NULL; GLUTAREDOXIN-RELATED PROTEIN,Monothiol
g,CUFF.6497.2
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04950.1 | Symbols:  | thioredoxin family protein | chr4:2517...    83   4e-17
AT3G15660.2 | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:5308...    49   1e-06
AT3G15660.1 | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:5308...    49   1e-06
AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein ...    47   3e-06

>AT4G04950.1 | Symbols:  | thioredoxin family protein |
           chr4:2517882-2519924 REVERSE LENGTH=488
          Length = 488

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 1   MHESGELHEFFKDHGIGTVGETK-LTESGNAXXXXXXXXXXXXXXXXWLENLVNSSPVIL 59
           MHESGEL + FKD GI TVG  +   E+G                   LE LVNS PV+L
Sbjct: 239 MHESGELKDAFKDLGITTVGSKESQDEAGKGGGVSSGNTGLSETLRARLEGLVNSKPVML 298

Query: 60  FMKGKPDEPKCGFRRKVVEILQQENV 85
           FMKG+P+EPKCGF  KVVEIL QE +
Sbjct: 299 FMKGRPEEPKCGFSGKVVEILNQEKI 324



 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 22/87 (25%)

Query: 1   MHESGELHEFFKDHGIGTVGETKLTESGNAXXXXXXXXXXXXXXXXWLENLVNSSPVILF 60
           M +SGEL +   + GI   GE  L +                     L+ L+NSS V+LF
Sbjct: 369 MQKSGELKKVLTEKGI--TGEQSLEDR--------------------LKALINSSEVMLF 406

Query: 61  MKGKPDEPKCGFRRKVVEILQQENVSL 87
           MKG PDEPKCGF  KVV+ L+ ENVS 
Sbjct: 407 MKGSPDEPKCGFSSKVVKALRGENVSF 433



 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 48  LENLVNSSPVILFMKGKPDEPKCGFRRKVVEILQQENVSL 87
           LE L NS PV+LFMKG P+EP+CGF RKVV+IL++ NV  
Sbjct: 157 LEKLTNSHPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDF 196


>AT3G15660.2 | Symbols: ATGRX4, GRX4 | glutaredoxin 4 |
           chr3:5308134-5309383 REVERSE LENGTH=169
          Length = 169

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 48  LENLVNSSPVILFMKGKPDEPKCGFRRKVVEILQQENVSLS 88
           +EN V  +PV+++MKG P+ P+CGF    V +LQQ NV +S
Sbjct: 69  VENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPIS 109


>AT3G15660.1 | Symbols: ATGRX4, GRX4 | glutaredoxin 4 |
           chr3:5308134-5309383 REVERSE LENGTH=169
          Length = 169

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 48  LENLVNSSPVILFMKGKPDEPKCGFRRKVVEILQQENVSLS 88
           +EN V  +PV+++MKG P+ P+CGF    V +LQQ NV +S
Sbjct: 69  VENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPIS 109


>AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein 1 |
           chr3:20341850-20342371 REVERSE LENGTH=173
          Length = 173

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 48  LENLVNSSPVILFMKGKPDEPKCGFRRKVVEILQQENV 85
           LE LVNS  V+LFMKG  D P CGF   VV+IL+  NV
Sbjct: 75  LEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNV 112