Miyakogusa Predicted Gene

Lj0g3v0111639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0111639.1 tr|D4N5G1|D4N5G1_SOYBN Rubisco activase
OS=Glycine max GN=RCA03 PE=2 SV=1,89.5,0,AAA,ATPase, AAA-type, core;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; P-loop containing
nucle,CUFF.6461.1
         (472 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39730.1 | Symbols: RCA | rubisco activase | chr2:16570951-16...   782   0.0  
AT2G39730.2 | Symbols: RCA | rubisco activase | chr2:16571046-16...   719   0.0  
AT2G39730.3 | Symbols: RCA | rubisco activase | chr2:16571174-16...   718   0.0  
AT1G73110.1 | Symbols:  | P-loop containing nucleoside triphosph...   334   1e-91
AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATPa...    50   2e-06
AT1G45000.1 | Symbols:  | AAA-type ATPase family protein | chr1:...    49   9e-06

>AT2G39730.1 | Symbols: RCA | rubisco activase |
           chr2:16570951-16573345 REVERSE LENGTH=474
          Length = 474

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/477 (78%), Positives = 412/477 (86%), Gaps = 8/477 (1%)

Query: 1   MVTLVPTVGAVNLAPLKLNGYSNG-TPLTSSAFFGTGLKKVSSVIPSQR----NFKVSAQ 55
           M   V TVGA+N APL LNG  +G     +S F G  +  VS    S +    +FKV A 
Sbjct: 1   MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA- 59

Query: 56  IEYDEEKQTSKDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 115
               E+KQT  DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+S 
Sbjct: 60  --VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQ 117

Query: 116 GLRQYNLDNTMDGFYIAPAFMDKVVVHITKNFLSLPNIKVPLILGVWGGKGQGKSFQCEL 175
           GLRQYNLDN MDGFYIAPAFMDK+VVHITKNFL+LPNIKVPLILG+WGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCEL 177

Query: 176 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRM 235
           V AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCLFINDLDAGAGRM
Sbjct: 178 VMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRM 237

Query: 236 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 295
           GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPII TGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRD 297

Query: 296 GRMEKFYWAPTREDRIGVCQGIFRTDGIPTDDIVKLVDTFPGQSIDFFGALRARVYDDEV 355
           GRMEKFYWAPTREDRIGVC+GIFRTD I  +DIV LVD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEV 357

Query: 356 RKWISGVGVENVGRRLVNSKEGPPTFEQPKMSIEKLLEYGNMLVKEQENVKRVQLADKYL 415
           RK++  +GVE +G+RLVNS+EGPP FEQP+M+ EKL+EYGNMLV EQENVKRVQLA+ YL
Sbjct: 358 RKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417

Query: 416 KEAALGDANEDAINTGNFYGQGAQHVHVPIPEGCTDPAAENYDPTARSDDGSCTYKF 472
            +AALGDAN DAI  G FYG+GAQ V++P+PEGCTDP AEN+DPTARSDDG+C Y F
Sbjct: 418 SQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474


>AT2G39730.2 | Symbols: RCA | rubisco activase |
           chr2:16571046-16573345 REVERSE LENGTH=446
          Length = 446

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/441 (78%), Positives = 380/441 (86%), Gaps = 8/441 (1%)

Query: 1   MVTLVPTVGAVNLAPLKLNGYSNG-TPLTSSAFFGTGLKKVSSVIPSQR----NFKVSAQ 55
           M   V TVGA+N APL LNG  +G     +S F G  +  VS    S +    +FKV A 
Sbjct: 1   MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA- 59

Query: 56  IEYDEEKQTSKDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 115
               E+KQT  DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+S 
Sbjct: 60  --VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQ 117

Query: 116 GLRQYNLDNTMDGFYIAPAFMDKVVVHITKNFLSLPNIKVPLILGVWGGKGQGKSFQCEL 175
           GLRQYNLDN MDGFYIAPAFMDK+VVHITKNFL+LPNIKVPLILG+WGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCEL 177

Query: 176 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRM 235
           V AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCLFINDLDAGAGRM
Sbjct: 178 VMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRM 237

Query: 236 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 295
           GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPII TGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRD 297

Query: 296 GRMEKFYWAPTREDRIGVCQGIFRTDGIPTDDIVKLVDTFPGQSIDFFGALRARVYDDEV 355
           GRMEKFYWAPTREDRIGVC+GIFRTD I  +DIV LVD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEV 357

Query: 356 RKWISGVGVENVGRRLVNSKEGPPTFEQPKMSIEKLLEYGNMLVKEQENVKRVQLADKYL 415
           RK++  +GVE +G+RLVNS+EGPP FEQP+M+ EKL+EYGNMLV EQENVKRVQLA+ YL
Sbjct: 358 RKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417

Query: 416 KEAALGDANEDAINTGNFYGQ 436
            +AALGDAN DAI  G FYG+
Sbjct: 418 SQAALGDANADAIGRGTFYGK 438


>AT2G39730.3 | Symbols: RCA | rubisco activase |
           chr2:16571174-16573345 REVERSE LENGTH=441
          Length = 441

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/441 (78%), Positives = 380/441 (86%), Gaps = 8/441 (1%)

Query: 1   MVTLVPTVGAVNLAPLKLNGYSNG-TPLTSSAFFGTGLKKVSSVIPSQR----NFKVSAQ 55
           M   V TVGA+N APL LNG  +G     +S F G  +  VS    S +    +FKV A 
Sbjct: 1   MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA- 59

Query: 56  IEYDEEKQTSKDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 115
               E+KQT  DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+S 
Sbjct: 60  --VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQ 117

Query: 116 GLRQYNLDNTMDGFYIAPAFMDKVVVHITKNFLSLPNIKVPLILGVWGGKGQGKSFQCEL 175
           GLRQYNLDN MDGFYIAPAFMDK+VVHITKNFL+LPNIKVPLILG+WGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCEL 177

Query: 176 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRM 235
           V AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCLFINDLDAGAGRM
Sbjct: 178 VMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRM 237

Query: 236 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 295
           GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN RVPII TGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRD 297

Query: 296 GRMEKFYWAPTREDRIGVCQGIFRTDGIPTDDIVKLVDTFPGQSIDFFGALRARVYDDEV 355
           GRMEKFYWAPTREDRIGVC+GIFRTD I  +DIV LVD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEV 357

Query: 356 RKWISGVGVENVGRRLVNSKEGPPTFEQPKMSIEKLLEYGNMLVKEQENVKRVQLADKYL 415
           RK++  +GVE +G+RLVNS+EGPP FEQP+M+ EKL+EYGNMLV EQENVKRVQLA+ YL
Sbjct: 358 RKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417

Query: 416 KEAALGDANEDAINTGNFYGQ 436
            +AALGDAN DAI  G FYG+
Sbjct: 418 SQAALGDANADAIGRGTFYGK 438


>AT1G73110.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:27494344-27496844
           REVERSE LENGTH=432
          Length = 432

 Score =  334 bits (856), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 174/372 (46%), Positives = 241/372 (64%), Gaps = 12/372 (3%)

Query: 51  KVSAQIEYDEEKQTSKDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 110
           K+S Q  ++ +    KD    L  +  +    +    GM+D +F           V   +
Sbjct: 63  KLSEQSSWEVKDSEGKDYLYRLGAESDNVNIAVGARSGMIDDVFIGDFLGKDSDIV---F 119

Query: 111 DYISAGLRQYNLDNTMDGFYIAPAFMDKVVVHITKNFLSLP-NIKVPLILGVWGGKGQGK 169
           DY     R +  ++    +YIAP+F+DKV VHI KN+L+   NIK+PLILG+WGGKGQGK
Sbjct: 120 DYRQKATRSF--EHLQGDYYIAPSFLDKVAVHIVKNYLAPSLNIKIPLILGIWGGKGQGK 177

Query: 170 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDL 228
           +FQ EL+F  MG+ P++MSAGELES  AGEP +LIR RYR A+ +I+ +GKM  L IND+
Sbjct: 178 TFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDI 237

Query: 229 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENP-RVPIIVTGNDFST 287
           DAG GR G  TQ TVNNQ+V  TLMN+ADNPT V +   + + +   RVP+IVTGNDFST
Sbjct: 238 DAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFST 296

Query: 288 LYAPLIRDGRMEKFYWAPTREDRIGVCQGIFRTDGIPTDDIVKLVDTFPGQSIDFFGALR 347
           LYAPLIR+GRMEKFYW PTRED + +   ++  DGI   D++ +VD FP Q++DF+GALR
Sbjct: 297 LYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALR 356

Query: 348 ARVYDDEVRKWISGV-GVENVGRRLVNSKEGP--PTFEQPKMSIEKLLEYGNMLVKEQEN 404
           +R YD  + KW+    G+E +G+ L+  K+    P F  P+ ++E LLE G  L+ EQ+ 
Sbjct: 357 SRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKL 416

Query: 405 VKRVQLADKYLK 416
           +   +L+ +Y+K
Sbjct: 417 IMETKLSKEYMK 428


>AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATPase
           4A | chr5:17248563-17251014 REVERSE LENGTH=399
          Length = 399

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 20/194 (10%)

Query: 153 IKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 212
           IK P  + ++G  G GK+     + + +  N + + +  +     GE A+LIR+ +  A 
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228

Query: 213 DIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE 272
              R+ + C +F++++DA  GR    ++ T  ++ +  TLM + +     QL G  N   
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276

Query: 273 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CQGIFRTDGIPTD 326
             +V +I+  N    L   L+R GR+++    P     +R D + +   GI +   I  +
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335

Query: 327 DIVKLVDTFPGQSI 340
            IVKL + F G  +
Sbjct: 336 AIVKLAEGFNGADL 349


>AT1G45000.1 | Symbols:  | AAA-type ATPase family protein |
           chr1:17009220-17011607 FORWARD LENGTH=399
          Length = 399

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)

Query: 153 IKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 212
           IK P  + ++G  G GK+     + + +  N + + +  +     GE A+LIR+ +  A 
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228

Query: 213 DIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE 272
              R+ + C +F++++DA  GR    ++ T  ++ +  TLM + +     QL G    ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275

Query: 273 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCQ----GIFRTDGIPTD 326
             +V +I+  N    L   L+R GR+++      P  + R+ + +    GI +   I  +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335

Query: 327 DIVKLVDTFPGQSI 340
            IVKL + F G  +
Sbjct: 336 AIVKLGEGFNGADL 349