Miyakogusa Predicted Gene

Lj0g3v0111309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0111309.1 Non Chatacterized Hit- tr|A2Q3V0|A2Q3V0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,81.82,0.00000000002,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL; coiled-coil,NULL,CUFF.6438.1
         (337 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) ...   244   4e-65
AT5G24740.2 | Symbols:  | Protein of unknown function (DUF1162) ...   188   4e-48

>AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) |
           chr5:8470073-8489703 REVERSE LENGTH=3464
          Length = 3464

 Score =  244 bits (624), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 139/337 (41%), Positives = 201/337 (59%), Gaps = 49/337 (14%)

Query: 5   SNGMVFGAQENKIVEIKGLEFYSSMFHSTMDLVTM-DNTGYS--CSASNIRSEGNHYNSI 61
           S G V G Q N +VE++GLE Y  M+   MD  ++ +  G+   C +   R + N +  +
Sbjct: 191 SVGRVRGGQVNILVEVEGLEIYCDMYEGNMDFPSVNEKIGFDNWCQS---RLQSNRFGYL 247

Query: 62  LAPCDVTLILSANRSQKVDDNAPQYSLTAELSDLVISLDEVQLQQMFLVWDYVCTCRLRE 121
           L P  V++ L  NRS ++ D+ PQYS++AEL+D+V++L+E QLQQ+ ++ DY+ T +LRE
Sbjct: 248 LKPVHVSVTLLVNRSGELYDDLPQYSISAELTDVVVTLNEFQLQQILILLDYLQTSQLRE 307

Query: 122 KYGRFRPWHCPLPRKCEGWQIFWWHYAQESVLSDVRKKLKKTSWRYLGDRLIFRRNYMNL 181
           +YGR+RP    L RK  GWQ  WWHYAQ SVLSD                          
Sbjct: 308 RYGRYRPCSTSLSRKPPGWQKLWWHYAQNSVLSD-------------------------- 341

Query: 182 YKTKLDFLRQEQPVDDNVLRDLEKMEKESDLDDILNYRSAAEYEMRELLTRCXXXXXXXG 241
                        +D ++   LE++EK+SD+DDIL+YRSAAE EM+E  +         G
Sbjct: 342 ------------SIDKSIRLGLEELEKKSDIDDILSYRSAAEGEMQEACSELTVNMGATG 389

Query: 242 RIQTDIH---TDNHCNDEHTV-KSRGWLNWLSRGMLGAGGTDDSSQFSGVVSFD-VKDIS 296
             +++      +   +D+ T+ KSRGWLNWLSRGMLGAGGT+DSSQFSGVVS + VKDI 
Sbjct: 390 ATRSEKEQSAPEKEPSDDPTLNKSRGWLNWLSRGMLGAGGTEDSSQFSGVVSDEVVKDIH 449

Query: 297 EATEFHPLVSSSVDFATKHELCIFASKIEIRQISATL 333
           +AT+F+PL SS  + +   ++C  + ++ +R+ SATL
Sbjct: 450 KATKFYPLSSSPRNTSATGKICTCSIRLNVRKFSATL 486


>AT5G24740.2 | Symbols:  | Protein of unknown function (DUF1162) |
           chr5:8486432-8489703 REVERSE LENGTH=389
          Length = 389

 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/192 (48%), Positives = 129/192 (67%), Gaps = 6/192 (3%)

Query: 5   SNGMVFGAQENKIVEIKGLEFYSSMFHSTMDLVTM-DNTGYS--CSASNIRSEGNHYNSI 61
           S G V G Q N +VE++GLE Y  M+   MD  ++ +  G+   C +   R + N +  +
Sbjct: 191 SVGRVRGGQVNILVEVEGLEIYCDMYEGNMDFPSVNEKIGFDNWCQS---RLQSNRFGYL 247

Query: 62  LAPCDVTLILSANRSQKVDDNAPQYSLTAELSDLVISLDEVQLQQMFLVWDYVCTCRLRE 121
           L P  V++ L  NRS ++ D+ PQYS++AEL+D+V++L+E QLQQ+ ++ DY+ T +LRE
Sbjct: 248 LKPVHVSVTLLVNRSGELYDDLPQYSISAELTDVVVTLNEFQLQQILILLDYLQTSQLRE 307

Query: 122 KYGRFRPWHCPLPRKCEGWQIFWWHYAQESVLSDVRKKLKKTSWRYLGDRLIFRRNYMNL 181
           +YGR+RP    L RK  GWQ  WWHYAQ SVLSDVRKKL KTSWR+L  R+  RR Y+N 
Sbjct: 308 RYGRYRPCSTSLSRKPPGWQKLWWHYAQNSVLSDVRKKLWKTSWRFLEQRMRIRRRYINF 367

Query: 182 YKTKLDFLRQEQ 193
           YK KLD L +EQ
Sbjct: 368 YKIKLDLLLREQ 379