Miyakogusa Predicted Gene

Lj0g3v0110789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0110789.1 Non Chatacterized Hit- tr|K3XMR4|K3XMR4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si003187,85.62,0,seg,NULL; HISTONE_H2A,Histone H2A; Histone,Histone
core; HISTONE H2A,NULL; Histone 2A,Histone H2A; n,CUFF.6414.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02560.1 | Symbols: HTA12 | histone H2A 12 | chr5:575437-5764...   174   2e-44
AT5G59870.1 | Symbols: HTA6 | histone H2A 6 | chr5:24115605-2411...   165   1e-41
AT5G02560.2 | Symbols: HTA12 | histone H2A 12 | chr5:575437-5764...   163   5e-41
AT5G27670.1 | Symbols: HTA7 | histone H2A 7 | chr5:9792807-97933...   156   6e-39
AT1G51060.1 | Symbols: HTA10 | histone H2A 10 | chr1:18926948-18...   137   3e-33
AT1G08880.1 | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histone...   136   6e-33
AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma h...   135   9e-33
AT4G27230.2 | Symbols: HTA2 | histone H2A 2 | chr4:13637515-1363...   134   2e-32
AT4G27230.1 | Symbols: HTA2 | histone H2A 2 | chr4:13637515-1363...   134   2e-32
AT3G20670.1 | Symbols: HTA13 | histone H2A 13 | chr3:7229472-722...   134   2e-32
AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily ...   134   3e-32
AT3G54560.1 | Symbols: HTA11 | histone H2A 11 | chr3:20196532-20...    84   5e-17
AT2G38810.2 | Symbols: HTA8 | histone H2A 8 | chr2:16219444-1622...    82   2e-16
AT2G38810.3 | Symbols: HTA8 | histone H2A 8 | chr2:16219444-1622...    82   2e-16
AT2G38810.1 | Symbols: HTA8 | histone H2A 8 | chr2:16219444-1622...    82   2e-16
AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 | chr1:19645...    80   4e-16

>AT5G02560.1 | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456
           FORWARD LENGTH=153
          Length = 153

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 100/130 (76%), Gaps = 3/130 (2%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
           VSRS+K+GLQFPVGRIGRYLKKGRY++RVGTGAP                  GNAARDNK
Sbjct: 25  VSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 84

Query: 85  KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT--AEKVAKEPKSPA 142
           KNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPNINP+LLPKK+  A    K PKSP+
Sbjct: 85  KNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPS 144

Query: 143 KKGVKSPKKA 152
            K  KSPKK+
Sbjct: 145 -KATKSPKKS 153


>AT5G59870.1 | Symbols: HTA6 | histone H2A 6 |
           chr5:24115605-24116144 REVERSE LENGTH=150
          Length = 150

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 100/130 (76%), Gaps = 6/130 (4%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
           VS+S+KAGLQFPVGRI R+LKKGRYAQR+G GAP                  GNAARDNK
Sbjct: 25  VSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNK 84

Query: 85  KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKE--PKSPA 142
           K+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPNIN VLLPKK+A K A+E   KSP 
Sbjct: 85  KSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKSATKPAEEKATKSP- 143

Query: 143 KKGVKSPKKA 152
              VKSPKKA
Sbjct: 144 ---VKSPKKA 150


>AT5G02560.2 | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456
           FORWARD LENGTH=177
          Length = 177

 Score =  163 bits (412), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 100/154 (64%), Gaps = 27/154 (17%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXX-------------------- 64
           VSRS+K+GLQFPVGRIGRYLKKGRY++RVGTGAP                          
Sbjct: 25  VSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAENSCGFCSVASLTI 84

Query: 65  ----XXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
                           GNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 85  YRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 144

Query: 121 INPVLLPKKT--AEKVAKEPKSPAKKGVKSPKKA 152
           INP+LLPKK+  A    K PKSP+ K  KSPKK+
Sbjct: 145 INPILLPKKSEKAASTTKTPKSPS-KATKSPKKS 177


>AT5G27670.1 | Symbols: HTA7 | histone H2A 7 | chr5:9792807-9793365
           REVERSE LENGTH=150
          Length = 150

 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 92/128 (71%), Gaps = 3/128 (2%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
           VS+S+KAGLQFPVGRI RYLKKGRYA R G+GAP                  GNAARDNK
Sbjct: 26  VSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNK 85

Query: 85  KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKVAKEPKSPAKK 144
           KNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLLPKK+    ++  K+ A  
Sbjct: 86  KNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSSQAEKASA-- 143

Query: 145 GVKSPKKA 152
             KSPKKA
Sbjct: 144 -TKSPKKA 150


>AT1G51060.1 | Symbols: HTA10 | histone H2A 10 |
           chr1:18926948-18927443 FORWARD LENGTH=132
          Length = 132

 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/106 (64%), Positives = 78/106 (73%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
            +RS KAGLQFPVGRI R+LKKG+YA+RVG GAP                  GNAARDNK
Sbjct: 17  TTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76

Query: 85  KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 130
           K RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT
Sbjct: 77  KTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122


>AT1G08880.1 | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histone
           superfamily protein | chr1:2847144-2847676 REVERSE
           LENGTH=142
          Length = 142

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 75/105 (71%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
           VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNK
Sbjct: 23  VSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 82

Query: 85  KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 129
           K RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP K
Sbjct: 83  KTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127


>AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma
           histone variant H2AX | chr1:20414607-20415206 REVERSE
           LENGTH=142
          Length = 142

 Score =  135 bits (341), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 75/105 (71%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
           VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNK
Sbjct: 23  VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 82

Query: 85  KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 129
           K RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP K
Sbjct: 83  KTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127


>AT4G27230.2 | Symbols: HTA2 | histone H2A 2 |
           chr4:13637515-13638325 REVERSE LENGTH=131
          Length = 131

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 76/106 (71%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
            SRS KAGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNK
Sbjct: 17  TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76

Query: 85  KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 130
           K RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK 
Sbjct: 77  KTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122


>AT4G27230.1 | Symbols: HTA2 | histone H2A 2 |
           chr4:13637515-13638325 REVERSE LENGTH=131
          Length = 131

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 76/106 (71%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 84
            SRS KAGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNK
Sbjct: 17  TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76

Query: 85  KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 130
           K RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK 
Sbjct: 77  KTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122


>AT3G20670.1 | Symbols: HTA13 | histone H2A 13 |
           chr3:7229472-7229963 FORWARD LENGTH=132
          Length = 132

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 75/104 (72%)

Query: 26  SRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 85
           SRS KAGLQFPVGRI R+LK G+YA RVG GAP                  GNAARDNKK
Sbjct: 18  SRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77

Query: 86  NRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 129
            RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK
Sbjct: 78  TRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKK 121


>AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily
           protein | chr5:22196540-22197279 FORWARD LENGTH=130
          Length = 130

 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 76/105 (72%)

Query: 26  SRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 85
           SRS KAGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNKK
Sbjct: 18  SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77

Query: 86  NRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 130
            RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK 
Sbjct: 78  TRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122


>AT3G54560.1 | Symbols: HTA11 | histone H2A 11 |
           chr3:20196532-20197466 FORWARD LENGTH=136
          Length = 136

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 63/109 (57%), Gaps = 2/109 (1%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 83
           +SRS +AG+QFPVGRI R LK    A  RVG  A                   GNA++D 
Sbjct: 29  ISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDL 88

Query: 84  KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
           K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K T E
Sbjct: 89  KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTKE 136


>AT2G38810.2 | Symbols: HTA8 | histone H2A 8 |
           chr2:16219444-16220679 REVERSE LENGTH=136
          Length = 136

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 64/109 (58%), Gaps = 2/109 (1%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 83
           +SRS +AG+QFPVGRI R LK+   A  RVG  A                   GNA++D 
Sbjct: 29  ISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDL 88

Query: 84  KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
           K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct: 89  KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNKVTKD 136


>AT2G38810.3 | Symbols: HTA8 | histone H2A 8 |
           chr2:16219444-16220679 REVERSE LENGTH=136
          Length = 136

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 64/109 (58%), Gaps = 2/109 (1%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 83
           +SRS +AG+QFPVGRI R LK+   A  RVG  A                   GNA++D 
Sbjct: 29  ISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDL 88

Query: 84  KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
           K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct: 89  KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNKVTKD 136


>AT2G38810.1 | Symbols: HTA8 | histone H2A 8 |
           chr2:16219444-16220679 REVERSE LENGTH=136
          Length = 136

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 64/109 (58%), Gaps = 2/109 (1%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 83
           +SRS +AG+QFPVGRI R LK+   A  RVG  A                   GNA++D 
Sbjct: 29  ISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDL 88

Query: 84  KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
           K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct: 89  KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNKVTKD 136


>AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 |
           chr1:19645409-19646221 FORWARD LENGTH=134
          Length = 134

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 25  VSRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 83
           ++RS +AGLQFPVGR+ R LK    A  RVG  A                   GNA++D 
Sbjct: 27  ITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDL 86

Query: 84  KKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 132
           K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K   E
Sbjct: 87  KVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSAKE 134