Miyakogusa Predicted Gene

Lj0g3v0109839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109839.1 Non Chatacterized Hit- tr|D7MNU4|D7MNU4_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,68.97,2e-17,seg,NULL,CUFF.6323.1
         (64 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49560.1 | Symbols:  | Putative methyltransferase family prot...    79   9e-16
AT3G50850.1 | Symbols:  | Putative methyltransferase family prot...    74   3e-14

>AT5G49560.1 | Symbols:  | Putative methyltransferase family protein
           | chr5:20110961-20111785 REVERSE LENGTH=274
          Length = 274

 Score = 78.6 bits (192), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 37/46 (80%)

Query: 18  AHTRRWKKESVFFKKARKHFNVDVLHVDTPSNGSRVGVVVYRFVGK 63
           AH RRWKKESVFFKKARK F+VDV+H D P   SR+GVVVYRF  K
Sbjct: 218 AHLRRWKKESVFFKKARKLFDVDVIHSDVPQESSRIGVVVYRFTTK 263


>AT3G50850.1 | Symbols:  | Putative methyltransferase family protein
           | chr3:18901389-18902144 REVERSE LENGTH=251
          Length = 251

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 18  AHTRRWKKESVFFKKARKHFNVDVLHVDTPSNGSRVGVVVYRFVGK 63
           AH +RWKKES+FFKKAR+ F+VDV+H D P  G+R+GVVVYRF  K
Sbjct: 202 AHLKRWKKESIFFKKARRFFDVDVIHCDDPQEGARIGVVVYRFAPK 247