Miyakogusa Predicted Gene
- Lj0g3v0109419.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0109419.1 tr|B9N1H2|B9N1H2_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_743006
PE=4,30.77,1e-17,seg,NULL,CUFF.6285.1
(285 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53025.1 | Symbols: | Ubiquitin-conjugating enzyme family pr... 75 7e-14
AT3G15355.1 | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzym... 67 1e-11
AT2G33770.1 | Symbols: UBC24, ATUBC24, PHO2 | phosphate 2 | chr2... 56 3e-08
AT1G53023.1 | Symbols: | Ubiquitin-conjugating enzyme family pr... 53 2e-07
>AT1G53025.1 | Symbols: | Ubiquitin-conjugating enzyme family
protein | chr1:19757072-19759474 REVERSE LENGTH=543
Length = 543
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 24/203 (11%)
Query: 89 MDVDEYALLLEAQFDNEDMPPGIEAPFNW-LSKTGNSTVVSSNLQIKMDNVGRYSGTELS 147
+DVD+Y++ + D +D+P G E W L+ + T SS ++ ++ Y L+
Sbjct: 103 IDVDDYSMYQDV-LDPKDVPAGAEVTVPWGLNSSSKGTAKSSISIMRSQSMKGYGTVSLA 161
Query: 148 ----PQLFSQAAPNKKKSATSQRSGRDLNLSLGKESFKSYWPSKFSASENHGSVDNPDAM 203
PQL+ P + ++ S S F + P + + V NP
Sbjct: 162 TTNVPQLWDYTLPQQNQAIYSSVS------------FSAVQPQ----TPDVVMVTNPTPN 205
Query: 204 KLPQAARDGNKRKALDHPVLAKSDDDSNEILRK--FPSFKQFDTVEDAADHHFFQRNSSL 261
A + P+ + D + L++ FK+FDTVED +DHH+ + S
Sbjct: 206 PFSYDASASSSHPIAAEPISSVQDSSNARKLKEEFLRDFKRFDTVEDFSDHHYASKGKSS 265
Query: 262 KQNPKKWAKKIQDDWKILEKDLP 284
KQ+ K W KK+Q DWKILE DLP
Sbjct: 266 KQHSKNWVKKVQADWKILENDLP 288
>AT3G15355.1 | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzyme
25 | chr3:5183858-5186669 FORWARD LENGTH=609
Length = 609
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 240 FKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKILEKDLP 284
FK+FD VED +DHH+ + ++ KQ+ K WAK+IQD+W+ILEKDLP
Sbjct: 305 FKRFDIVEDFSDHHYASKGTTSKQHSKDWAKRIQDEWRILEKDLP 349
>AT2G33770.1 | Symbols: UBC24, ATUBC24, PHO2 | phosphate 2 |
chr2:14277785-14281482 REVERSE LENGTH=907
Length = 907
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 193 NHGSVDNPDAM-KLPQAARDGNKRKALDHPVLAKSDDDSNEILRKFPSFKQFDTVEDAAD 251
N G VD M +P + NK LD +L S R F+QFD V D +D
Sbjct: 595 NSGEVDMTTTMVNIPIEGKGINK--TLDSTLLENS--------RNQVRFRQFDMVNDCSD 644
Query: 252 HHFFQRNSSLKQN--PKKWAKKIQDDWKILEKDLP 284
HHF + L Q+ K W KK+Q +W LE +LP
Sbjct: 645 HHFLSSDKGLAQSQVTKSWVKKVQQEWSNLEANLP 679
>AT1G53023.1 | Symbols: | Ubiquitin-conjugating enzyme family
protein | chr1:19754214-19755843 REVERSE LENGTH=316
Length = 316
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 35/62 (56%), Gaps = 12/62 (19%)
Query: 232 EILRKFPSFKQFDTVEDAADHHFFQRNS---------SLKQNPKKWAKKIQDDWKILEKD 282
E LR FK+FDTVED +DHH+ S K PK W K IQ +WKIL+K+
Sbjct: 16 EFLR---DFKRFDTVEDFSDHHYAAEGSPAKLSLWHLKFKGRPKNWVKDIQKEWKILDKN 72
Query: 283 LP 284
LP
Sbjct: 73 LP 74