Miyakogusa Predicted Gene

Lj0g3v0109299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109299.1 tr|B9MW42|B9MW42_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_918921 PE=4
SV=1,57.3,2e-16,seg,NULL,TC76323.path1.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34220.1 | Symbols:  | Regulator of Vps4 activity in the MVB ...    54   2e-08
AT1G34220.2 | Symbols:  | Regulator of Vps4 activity in the MVB ...    54   2e-08

>AT1G34220.1 | Symbols:  | Regulator of Vps4 activity in the MVB
           pathway protein | chr1:12463102-12465911 REVERSE
           LENGTH=649
          Length = 649

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 54  HQPKRLPSMDDDPYFSYPNLFSSQN--SNVGSQDHADNSRSTHD 95
           HQ  RLPSM+DDPY+SYPNLF+SQ    + GS   +DN+R  HD
Sbjct: 605 HQQMRLPSMEDDPYYSYPNLFTSQKHDPSSGSHSFSDNTRPAHD 648


>AT1G34220.2 | Symbols:  | Regulator of Vps4 activity in the MVB
           pathway protein | chr1:12463102-12465911 REVERSE
           LENGTH=619
          Length = 619

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 54  HQPKRLPSMDDDPYFSYPNLFSSQN--SNVGSQDHADNSRSTHD 95
           HQ  RLPSM+DDPY+SYPNLF+SQ    + GS   +DN+R  HD
Sbjct: 575 HQQMRLPSMEDDPYYSYPNLFTSQKHDPSSGSHSFSDNTRPAHD 618