Miyakogusa Predicted Gene

Lj0g3v0109069.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109069.1 Non Chatacterized Hit- tr|O80445|O80445_ARATH
Putative uncharacterized protein At2g38200
OS=Arabidop,40.88,8e-19,zf-C3HC4_3,NULL,gene.g8238.t1.1
         (246 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01450.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   170   1e-42
AT2G38185.3 | Symbols:  | RING/U-box superfamily protein | chr2:...   166   1e-41
AT2G38185.2 | Symbols:  | RING/U-box superfamily protein | chr2:...   164   3e-41
AT2G38185.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   164   3e-41
AT2G38185.4 | Symbols:  | RING/U-box superfamily protein | chr2:...   158   3e-39
AT2G38220.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   139   1e-33
AT2G38195.2 | Symbols:  | RING/U-box superfamily protein | chr2:...   138   4e-33
AT2G38195.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   137   9e-33
AT4G24204.3 | Symbols:  | RING/U-box superfamily protein | chr4:...    57   1e-08
AT4G24204.2 | Symbols:  | RING/U-box superfamily protein | chr4:...    57   1e-08
AT4G24204.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    51   9e-07

>AT5G01450.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:183693-186244 REVERSE LENGTH=444
          Length = 444

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 130/239 (54%), Gaps = 11/239 (4%)

Query: 8   GRESLVEWTQDPSFPNATLYWNTIYGSGSITQKISHSYTYYVAVSNMNPESVEVELNFIV 67
           G + L EW QDP+ P+ TL W+ I  SG I Q I+ S +YYVAV N+    V+  ++  V
Sbjct: 193 GVDGLSEWVQDPTRPDTTLSWHIISDSGYIEQDITKSSSYYVAVGNVYLNEVKATIDIQV 252

Query: 68  NSFLYNTTNTSHRCSLDNGLCRLSFMYLESNTALLTTPGPGEGVSDEEWFDVKVSYEPRW 127
              LY+TTN  + CS  N  C LS     +N A+LT+PGP    S  E F  K+SYEPRW
Sbjct: 253 EGVLYDTTNAYYNCSFPNDKCTLSVPLFGTNAAVLTSPGPKLNNSKNE-FCAKLSYEPRW 311

Query: 128 IIYLTGSGVMAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFLLPGKNNHYESFSN 187
           I Y+   GV+  L+          Q  +E+    +  +V       L+PGK++   S+ +
Sbjct: 312 IAYIVCMGVVTALLLIVSSLFNKRQPVTEDETVDENDDVAP-----LIPGKDDDNSSWCS 366

Query: 188 EEEDLTMWLEENSVEGKQVIKGETSNDLQFLCVICFETPRDCFFLPCGHCAACFACGTR 246
               +    EE  +EG     GE  +  ++LC IC++ PRDCFFL CGHC ACF CGTR
Sbjct: 367 SYSSILTSTEE--LEGAH---GEGHSSTRYLCAICYDAPRDCFFLSCGHCVACFQCGTR 420


>AT2G38185.3 | Symbols:  | RING/U-box superfamily protein |
           chr2:16000516-16002699 FORWARD LENGTH=346
          Length = 346

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 20/235 (8%)

Query: 18  DPSFPNATLYWNTIYGSGSITQKISHSYTYYVAVSNMNPESVEVELNFIVNSFLYNTTNT 77
           DP++      WN I GSG I  +I  S +YY+AV+N+  + VEVELN  V + LY+T  +
Sbjct: 100 DPAYRYNVWSWNLIEGSGMIQLEIRKSSSYYLAVANLKSKDVEVELNIDVKAVLYDTKQS 159

Query: 78  SHRCSLDNGLCRLSFMYLESNTALLTTPGPGEGVS-DEEWFDVKVSYEPRWIIYLTGSGV 136
            + C+  NG C  + M L  N+ ++T+P   +GVS ++EW+ ++ SY+PR I Y+ G+GV
Sbjct: 160 FYNCNFSNGECTFNAMSLVGNSVVVTSPAASQGVSIEDEWY-IRFSYQPREIAYVIGTGV 218

Query: 137 MAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFLLPGKNNHY------ESFSNEEE 190
           +   +  A++FC  FQ S  E       E  S RT  L    ++        +S++N++ 
Sbjct: 219 VICFMLVAIQFCNRFQCSGGEG---HLTEDDSARTRLLADKDDDGSSMGSCDDSYANDDA 275

Query: 191 DLTMWLEENSVEGKQVIKGETSNDLQFLCVICFETPRDCFFLPCGHCAACFACGT 245
           DL  ++  +         GE SN  + LC ICF+ PRDCFFLPCGH  +C+ CGT
Sbjct: 276 DLEEFMGND---------GEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGT 321


>AT2G38185.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:16000155-16002699 FORWARD LENGTH=441
          Length = 441

 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 132/235 (56%), Gaps = 18/235 (7%)

Query: 17  QDPSFPNATLYWNTIYGSGSITQKISHSYTYYVAVSNMNPESVEVELNFIVNSFLYNTTN 76
            DP++      WN I GSG I  +I  S +YY+AV+N+  + VEVELN  V + LY+T  
Sbjct: 194 NDPAYRYNVWSWNLIEGSGMIQLEIRKSSSYYLAVANLKSKDVEVELNIDVKAVLYDTKQ 253

Query: 77  TSHRCSLDNGLCRLSFMYLESNTALLTTPGPGEGVSDEEWFDVKVSYEPRWIIYLTGSGV 136
           + + C+  NG C  + M L  N+ ++T+P   +GVS E+ + ++ SY+PR I Y+ G+GV
Sbjct: 254 SFYNCNFSNGECTFNAMSLVGNSVVVTSPAASQGVSIEDEWYIRFSYQPREIAYVIGTGV 313

Query: 137 MAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFLLPGKNNHY------ESFSNEEE 190
           +   +  A++FC  FQ S  E       E  S RT  L    ++        +S++N++ 
Sbjct: 314 VICFMLVAIQFCNRFQCSGGEG---HLTEDDSARTRLLADKDDDGSSMGSCDDSYANDDA 370

Query: 191 DLTMWLEENSVEGKQVIKGETSNDLQFLCVICFETPRDCFFLPCGHCAACFACGT 245
           DL  ++  +         GE SN  + LC ICF+ PRDCFFLPCGH  +C+ CGT
Sbjct: 371 DLEEFMGND---------GEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGT 416


>AT2G38185.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16000155-16002699 FORWARD LENGTH=441
          Length = 441

 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 132/235 (56%), Gaps = 18/235 (7%)

Query: 17  QDPSFPNATLYWNTIYGSGSITQKISHSYTYYVAVSNMNPESVEVELNFIVNSFLYNTTN 76
            DP++      WN I GSG I  +I  S +YY+AV+N+  + VEVELN  V + LY+T  
Sbjct: 194 NDPAYRYNVWSWNLIEGSGMIQLEIRKSSSYYLAVANLKSKDVEVELNIDVKAVLYDTKQ 253

Query: 77  TSHRCSLDNGLCRLSFMYLESNTALLTTPGPGEGVSDEEWFDVKVSYEPRWIIYLTGSGV 136
           + + C+  NG C  + M L  N+ ++T+P   +GVS E+ + ++ SY+PR I Y+ G+GV
Sbjct: 254 SFYNCNFSNGECTFNAMSLVGNSVVVTSPAASQGVSIEDEWYIRFSYQPREIAYVIGTGV 313

Query: 137 MAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFLLPGKNNHY------ESFSNEEE 190
           +   +  A++FC  FQ S  E       E  S RT  L    ++        +S++N++ 
Sbjct: 314 VICFMLVAIQFCNRFQCSGGEG---HLTEDDSARTRLLADKDDDGSSMGSCDDSYANDDA 370

Query: 191 DLTMWLEENSVEGKQVIKGETSNDLQFLCVICFETPRDCFFLPCGHCAACFACGT 245
           DL  ++  +         GE SN  + LC ICF+ PRDCFFLPCGH  +C+ CGT
Sbjct: 371 DLEEFMGND---------GEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGT 416


>AT2G38185.4 | Symbols:  | RING/U-box superfamily protein |
           chr2:16000155-16002699 FORWARD LENGTH=447
          Length = 447

 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 134/241 (55%), Gaps = 26/241 (10%)

Query: 18  DPSFPNATLYWNTIYGSGSITQKISHSYTYYVAVSNMNPESVEV------ELNFIVNSFL 71
           DP++      WN I GSG I  +I  S +YY+AV+N+  + VEV      ELN  V + L
Sbjct: 195 DPAYRYNVWSWNLIEGSGMIQLEIRKSSSYYLAVANLKSKDVEVTTTDQVELNIDVKAVL 254

Query: 72  YNTTNTSHRCSLDNGLCRLSFMYLESNTALLTTPGPGEGVS-DEEWFDVKVSYEPRWIIY 130
           Y+T  + + C+  NG C  + M L  N+ ++T+P   +GVS ++EW+ ++ SY+PR I Y
Sbjct: 255 YDTKQSFYNCNFSNGECTFNAMSLVGNSVVVTSPAASQGVSIEDEWY-IRFSYQPREIAY 313

Query: 131 LTGSGVMAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFLLPGKNNHY------ES 184
           + G+GV+   +  A++FC  FQ S  E       E  S RT  L    ++        +S
Sbjct: 314 VIGTGVVICFMLVAIQFCNRFQCSGGEG---HLTEDDSARTRLLADKDDDGSSMGSCDDS 370

Query: 185 FSNEEEDLTMWLEENSVEGKQVIKGETSNDLQFLCVICFETPRDCFFLPCGHCAACFACG 244
           ++N++ DL  ++  +         GE SN  + LC ICF+ PRDCFFLPCGH  +C+ CG
Sbjct: 371 YANDDADLEEFMGND---------GEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECG 421

Query: 245 T 245
           T
Sbjct: 422 T 422


>AT2G38220.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16008112-16010538 FORWARD LENGTH=404
          Length = 404

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 32/233 (13%)

Query: 17  QDPSFPNATLYWNTIYGSGSITQKISHSYTYYVAVSNMNPESVEVELNFIVNSFLYNTTN 76
           +D +F +    WN I GSG I   IS S  YY+ V+N+  + +EVEL+  V + LY+T  
Sbjct: 177 KDIAFRDTAWSWNLIQGSGMIQLDISKSKGYYLTVANLKRKDIEVELDIDVKAVLYDTKQ 236

Query: 77  TSHRCSLDNGLC--RLSFMYLESNTALLTTPGPGEGVS-DEEWFDVKVSYEPRWIIYLTG 133
           TS+ CS  NG C  +++  Y   N A++T+P  G+GVS D+EW+ +++SY+PR I Y + 
Sbjct: 237 TSYNCSFSNGECSFKMNERYPVENYAVVTSPALGQGVSIDDEWY-IELSYQPRLIAYGSF 295

Query: 134 SGVMAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFLLPGKNNHYESFSNEEEDLT 193
           +GV+   +  A+ FC   +                              E F + ++ + 
Sbjct: 296 TGVLLSFMLVAIHFCNKLKCCGG--------------------------EGFLSGDDSVR 329

Query: 194 MWLEENSVEGKQVIKGETSNDLQFLCVICFETPRDCFFLPCGHCAACFACGTR 246
             L  +  +       E SN  + LC ICF+ PRDC FLPCGHC +C+ CGT+
Sbjct: 330 TCLLADKGDNDCCNDVEASN--KSLCAICFDAPRDCCFLPCGHCVSCYQCGTK 380


>AT2G38195.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:16002654-16006261 FORWARD LENGTH=326
          Length = 326

 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 121/235 (51%), Gaps = 36/235 (15%)

Query: 17  QDPSFPNATLYWNTIYGSGSITQKISHSYTYYVAVSNMNPESVEVELNFIVNSFLYNTTN 76
           +D +F +    WN I GSG I   IS S  YY+ V+N+  + VEVEL+  V   LY+T  
Sbjct: 99  KDIAFRDTAWSWNLIQGSGMIQLDISKSKGYYLTVANLKRKDVEVELDIDVKVVLYDTKQ 158

Query: 77  TSHRCSLDNGLCRLSFMYLE----SNTALLTTPGPGEGVS-DEEWFDVKVSYEPRWIIYL 131
           +S+ CS  NG C  SF   E     N A++T+P  G+GVS D+EW+ +++SY+PR I Y 
Sbjct: 159 SSYNCSFSNGEC--SFKMNERSPVENYAVVTSPALGQGVSIDDEWY-IELSYQPRLIAYG 215

Query: 132 TGSGVMAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFLLPGKNNHYESFSNEEED 191
           + +GV+   +  A+ FC   +                              E F +E++ 
Sbjct: 216 SFTGVLLSFMLVAIHFCNKLKCCGG--------------------------EGFLSEDDS 249

Query: 192 LTMWLEENSVEGKQVIKGETSNDLQFLCVICFETPRDCFFLPCGHCAACFACGTR 246
           +   L  +  +       E SN  + LC ICF+ PRDC FLPCGHC +C+ CGT+
Sbjct: 250 VRTCLLADKGDNDCCNDVEASN--KSLCAICFDAPRDCCFLPCGHCVSCYQCGTK 302


>AT2G38195.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16003836-16006261 FORWARD LENGTH=399
          Length = 399

 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 121/235 (51%), Gaps = 36/235 (15%)

Query: 17  QDPSFPNATLYWNTIYGSGSITQKISHSYTYYVAVSNMNPESVEVELNFIVNSFLYNTTN 76
           +D +F +    WN I GSG I   IS S  YY+ V+N+  + VEVEL+  V   LY+T  
Sbjct: 172 KDIAFRDTAWSWNLIQGSGMIQLDISKSKGYYLTVANLKRKDVEVELDIDVKVVLYDTKQ 231

Query: 77  TSHRCSLDNGLCRLSFMYLES----NTALLTTPGPGEGVS-DEEWFDVKVSYEPRWIIYL 131
           +S+ CS  NG C  SF   E     N A++T+P  G+GVS D+EW+ +++SY+PR I Y 
Sbjct: 232 SSYNCSFSNGEC--SFKMNERSPVENYAVVTSPALGQGVSIDDEWY-IELSYQPRLIAYG 288

Query: 132 TGSGVMAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFLLPGKNNHYESFSNEEED 191
           + +GV+   +  A+ FC   +                              E F +E++ 
Sbjct: 289 SFTGVLLSFMLVAIHFCNKLKCCGG--------------------------EGFLSEDDS 322

Query: 192 LTMWLEENSVEGKQVIKGETSNDLQFLCVICFETPRDCFFLPCGHCAACFACGTR 246
           +   L  +  +       E SN  + LC ICF+ PRDC FLPCGHC +C+ CGT+
Sbjct: 323 VRTCLLADKGDNDCCNDVEASN--KSLCAICFDAPRDCCFLPCGHCVSCYQCGTK 375


>AT4G24204.3 | Symbols:  | RING/U-box superfamily protein |
           chr4:12562069-12562815 REVERSE LENGTH=178
          Length = 178

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 34/142 (23%)

Query: 115 EWFDVKVSYEPRWIIYLTGSGVMAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFL 174
            W+ + +S+  R +IY+T  G +  + +  ++F     +  +           ++R P +
Sbjct: 34  RWY-LGLSFSARVVIYITVLGTIMTITYLVLKFLSECDMEDD-----------TQRLPLV 81

Query: 175 LPGKNNHYESFSNEEEDLTMWL-----EENSVEGKQVIKG---ETSNDLQF--LCVICFE 224
                        EEE  T W      E   V GK  ++     +S+D+ +  LCVICFE
Sbjct: 82  ------------AEEEVTTDWTPPLINESLEVTGKGDVETASFSSSDDVDYSTLCVICFE 129

Query: 225 TPRDCFFLPCGHCAACFACGTR 246
             R+CFF+PCGH A C  C  R
Sbjct: 130 ERRNCFFVPCGHSATCRGCAQR 151


>AT4G24204.2 | Symbols:  | RING/U-box superfamily protein |
           chr4:12562069-12562646 REVERSE LENGTH=157
          Length = 157

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 34/142 (23%)

Query: 115 EWFDVKVSYEPRWIIYLTGSGVMAVLIFFAMRFCKVFQISSEERARFQQAEVLSERTPFL 174
            W+ + +S+  R +IY+T  G +  + +  ++F     +  +           ++R P +
Sbjct: 13  RWY-LGLSFSARVVIYITVLGTIMTITYLVLKFLSECDMEDD-----------TQRLPLV 60

Query: 175 LPGKNNHYESFSNEEEDLTMWL-----EENSVEGKQVIKG---ETSNDLQF--LCVICFE 224
                        EEE  T W      E   V GK  ++     +S+D+ +  LCVICFE
Sbjct: 61  ------------AEEEVTTDWTPPLINESLEVTGKGDVETASFSSSDDVDYSTLCVICFE 108

Query: 225 TPRDCFFLPCGHCAACFACGTR 246
             R+CFF+PCGH A C  C  R
Sbjct: 109 ERRNCFFVPCGHSATCRGCAQR 130


>AT4G24204.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:12562069-12562440 REVERSE LENGTH=123
          Length = 123

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 10/69 (14%)

Query: 188 EEEDLTMWL-----EENSVEGKQVIKG---ETSNDLQF--LCVICFETPRDCFFLPCGHC 237
           EEE  T W      E   V GK  ++     +S+D+ +  LCVICFE  R+CFF+PCGH 
Sbjct: 28  EEEVTTDWTPPLINESLEVTGKGDVETASFSSSDDVDYSTLCVICFEERRNCFFVPCGHS 87

Query: 238 AACFACGTR 246
           A C  C  R
Sbjct: 88  ATCRGCAQR 96