Miyakogusa Predicted Gene

Lj0g3v0109039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109039.1 Non Chatacterized Hit- tr|D8SB58|D8SB58_SELML
Putative uncharacterized protein OS=Selaginella
moelle,29.32,1e-18,ZINC_FINGER_C2H2_2,Zinc finger, C2H2;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; zinc finger,Zinc
finger,,NODE_32921_length_992_cov_152.976822.path2.1
         (286 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52010.1 | Symbols:  | C2H2-like zinc finger protein | chr5:2...   427   e-120
AT4G12240.1 | Symbols:  | zinc finger (C2H2 type) family protein...   217   7e-57

>AT5G52010.1 | Symbols:  | C2H2-like zinc finger protein |
           chr5:21121626-21122816 REVERSE LENGTH=396
          Length = 396

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/261 (75%), Positives = 229/261 (87%), Gaps = 1/261 (0%)

Query: 1   MVRDNKTGSYAAKQNKVVVLWDLDNKPPRGPPYHAAVSLKTLAESFGDVVDISAYANRHA 60
           MVR NK G +A K+ KVVVLWDLDNKPPRGPPY AA +L+ +AE  G VV+ISAYANRHA
Sbjct: 61  MVR-NKEGIFAPKEKKVVVLWDLDNKPPRGPPYEAATALRKVAEKLGRVVEISAYANRHA 119

Query: 61  FIHLPQWVLHERRQRKTTDILEKKGIVTPSDPYVCTVCGRKCKTNLDLKKHFKQLHQRER 120
           FIHLP WV+ ERR+R+  D +E+KG VTP DPY+C VCGRKCKTNLDLKKHFKQLH+RER
Sbjct: 120 FIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVCGRKCKTNLDLKKHFKQLHERER 179

Query: 121 QKKLNRMNSLKGKKRQRFKERFIRGNHKYNEAARTLVTPKVGYGLASELRRAGVFVKTVE 180
           QKK+NRM SLKGKKRQ+FKER++ GN KYNEAAR+L+TPKVGYGL +ELRRAGV+VKTVE
Sbjct: 180 QKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAGVYVKTVE 239

Query: 181 DKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLKRAREANLGTVVVGDADRALGQ 240
           DKPQAADWA+KRQ+QHSM+RGIDWL LVSDD DFS+ML++AREA+LGT+VV D DRALG+
Sbjct: 240 DKPQAADWAVKRQIQHSMTRGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDMDRALGR 299

Query: 241 HADFWVPWIAVEKGEVSEMDL 261
           HAD WVPW  VEKGE+ E DL
Sbjct: 300 HADLWVPWSGVEKGEIGEKDL 320


>AT4G12240.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr4:7287895-7288989 FORWARD LENGTH=364
          Length = 364

 Score =  217 bits (552), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 156/243 (64%), Gaps = 3/243 (1%)

Query: 16  KVVVLWDLDNKPPRG-PPYHAAVSLKTLAESFGDVVDISAYANRHAFIHLPQWVLHERRQ 74
           +V V WDLDNKPP   PPY AAV L+T A SFG V  + AYANRHAF ++P  V  +R+ 
Sbjct: 39  RVGVWWDLDNKPPASFPPYDAAVKLRTAASSFGTVKLMMAYANRHAFSYVPLEVREQRKD 98

Query: 75  RKTTDILEKKGIVTPSDPYVCTVCGRKCKTNLDLKKHFKQLHQRERQKKLNRMNSLKGKK 134
           RK  + LE KG+V P +PY C VC R+  TN  L  HFKQ+H+ E QK++ ++ S KG +
Sbjct: 99  RKLLNKLENKGLVKPPEPYFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESSKGHR 158

Query: 135 RQRFKERFIRGNHKYNEAARTLVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQM 194
           R R   ++     KY  AAR ++TPK GYGLA EL+RAG +VK V DKP AAD ALK  +
Sbjct: 159 RVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKRAGFWVKMVSDKPDAADKALKEHL 218

Query: 195 QHSMS-RGIDWLFLVSDDSDFSEMLKRAREANLGTVVVGDADR-ALGQHADFWVPWIAVE 252
              M  R ++ + LVSDDSDF+ +L  A+E  L TVV+GD++  AL + AD    W  V 
Sbjct: 219 VEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALKRVADVAYSWKEVT 278

Query: 253 KGE 255
            G+
Sbjct: 279 MGK 281