Miyakogusa Predicted Gene

Lj0g3v0109029.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109029.1 Non Chatacterized Hit- tr|D8RX66|D8RX66_SELML
Putative uncharacterized protein OS=Selaginella
moelle,36.05,1e-16,seg,NULL; SPRY,SPla/RYanodine receptor
SPRY,gene.g8235.t1.1
         (414 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G06536.1 | Symbols:  | SPla/RYanodine receptor (SPRY) domain-...   179   3e-45
AT4G06534.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   104   9e-23

>AT4G06536.1 | Symbols:  | SPla/RYanodine receptor (SPRY)
           domain-containing protein | chr4:3360746-3361255 FORWARD
           LENGTH=169
          Length = 169

 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 116/169 (68%), Gaps = 17/169 (10%)

Query: 251 GMKLILESEKAQWAGTNTIAGCGFDPRMKKVFFTLGSELVHVIHCQLVEFGTPLFPTLAA 310
           GMKL+ ESEK +WA  N + GCG+DPR KKV+FT+ S LVHVI+C+  EFGTPL+PTLA+
Sbjct: 3   GMKLVCESEKHEWAKENKVVGCGYDPRKKKVYFTVNSHLVHVINCKADEFGTPLYPTLAS 62

Query: 311 NTDIEVLVNFGQSAFKYAPANANRTPNPCFIAPLVYSSGATLGYDDSKELFSMGRIDSQW 370
           NT+  VLVN GQS F Y+PAN  RT NPC        +GA  G +DSKELFS+GRIDS +
Sbjct: 63  NTEARVLVNLGQSPFYYSPANGQRTSNPC--------AGAVAGLEDSKELFSIGRIDSHY 114

Query: 371 LNQSTPKGNHSNYVNNNRAS---------EFDEESEADLFEIVLDGSEK 410
           L+       +S+ + + RA+         ++DEES+ADLFEI L+ S K
Sbjct: 115 LSNFFINRGNSDEIASGRATVGNSHRRKLDYDEESDADLFEIALERSGK 163


>AT4G06534.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; Has 22 Blast hits to 22 proteins in 8 species:
           Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
           - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
           BLink). | chr4:3356870-3358087 FORWARD LENGTH=405
          Length = 405

 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 94/204 (46%), Gaps = 14/204 (6%)

Query: 56  LFSWADHPYLAADAVENGWSRFAFTXXXXXXXXXXXXXXTILGACAAGENGRESEAEISW 115
           LF W DHP L  +AVENGW+RF F               ++L          +    ISW
Sbjct: 97  LFIWTDHPALVTEAVENGWTRFGFAVHEPAPLVSGASPGSVLLGLCTTAGSEDPGVVISW 156

Query: 116 DVCHGSSEFMQKIRLNSGLKKDVHPNYNSSMSVASSVIRAAXXXXXXXXXNYAFPQEAYF 175
           +V +GS EF Q I+ N    + V+   +        ++RA          + AFPQEAYF
Sbjct: 157 EVSNGSVEFTQTIKFNQAFNETVNAKKH------LMILRAGLPLPGPQLISSAFPQEAYF 210

Query: 176 EITIL----NSQGDDHDQVVRKREGEKTKLLIQDG----SNAKSNLGNVEDMKLDGTEGG 227
           EITIL    +  G+  D      EGEKTKL    G      ++ +  N E +   G   G
Sbjct: 211 EITILEITQHHSGEAGDVGCDLVEGEKTKLFKNQGLKLVKRSEWDGKNEEAVLSLGLATG 270

Query: 228 TAGGAVPLRIPGTYPRSIGFNSNG 251
            + GA   R+PG +P SIGF S+G
Sbjct: 271 GSFGAGETRLPGKFPASIGFQSDG 294