Miyakogusa Predicted Gene

Lj0g3v0109009.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109009.2 tr|D3EPH5|D3EPH5_UCYNA ATP-dependent DNA helicase
RecG OS=cyanobacterium UCYN-A GN=UCYN_06780 PE=4
S,25,0.0000002,Nucleic acid-binding proteins,Nucleic acid-binding,
OB-fold-like; seg,NULL,CUFF.6257.2
         (544 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01440.1 | Symbols:  | DEAD/DEAH box RNA helicase family prot...   319   3e-87

>AT2G01440.1 | Symbols:  | DEAD/DEAH box RNA helicase family protein
            | chr2:193950-199056 REVERSE LENGTH=973
          Length = 973

 Score =  319 bits (817), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/431 (43%), Positives = 256/431 (59%), Gaps = 38/431 (8%)

Query: 126 CFSCKQLRNVVVFQGKGSCYSTFFSRRMRCGNFLPLKYSKWCYRMKHKFPEKKVVEMEPC 185
           C   ++LR+V+V Q +   ++     R+R  NF   K     YR KHK+ +  + ++E  
Sbjct: 12  CCGSRRLRSVIVIQAQRGNWN-----RIRLSNFFFSKVWNISYRSKHKYSDNLLEQVE-- 64

Query: 186 GGRGSSLKLRNQ------VFALLDYNKMSLKDVLDDS-------DISLICKTFPSITLGN 232
             + +S +L NQ      V AL++ +  ++ D +D         D+ L CK FPSI LG+
Sbjct: 65  --KYASARLENQSKLITKVAALMECD--NVDDFIDKKSDEQVKKDLVLACKRFPSIILGD 120

Query: 233 APKVDLYDGTELESETTNSSATEDSEQCFSDSSEARWVQNTLPEAQSPVYVDHSSVLSSS 292
           +  V+LY  ++   E+++   T              W     P+  S      SS     
Sbjct: 121 SRPVELYSNSKSYGESSSILKTPTDNSFLPTPMHGGWFD---PDNLSRTL---SSFCPEL 174

Query: 293 LQKDGSCPLIPQPMSSICEENLDRVIKEVSQEKLGLQSQSNVTPNDLFLDESISCFPGLS 352
           LQ D S      P   I ++      K  + E     +  +V     FL  SI   PGLS
Sbjct: 175 LQNDDSS----DPREDILDDGSSFTSKTATSEVEA--TSDDVFAAQRFLATSIDSMPGLS 228

Query: 353 KRHCRQLDDCGFHTFRKLLHHFPRSYANLQNAHAKIDDGQYLIFVGKVLSSRGVKANCSF 412
           KRH  QLD CGFHT +KLLHHFPR+YA+LQNA   I+DGQYLIFVGKVLSS+GV+A+ SF
Sbjct: 229 KRHSNQLDSCGFHTMKKLLHHFPRTYADLQNAQVDIEDGQYLIFVGKVLSSKGVRASSSF 288

Query: 413 SFLEVIVGCQITDSESASGHVTGNAIDGQEKTIYLHLKKFFRGSRFTFKPFLSSIANKYR 472
           SFLEVIV C+++  +     ++ NA D   K+I+LHLKKFFRG+RFT++PFL+SI  K++
Sbjct: 289 SFLEVIVSCEVSGRDRTPEDLSHNAEDKAGKSIFLHLKKFFRGTRFTWQPFLNSIQEKHK 348

Query: 473 EGDIACVSGKVRTMRAEDHYEMREYNIDVLEDGKELSFCAKERPYPIYPSKGGLNPTFLR 532
            GD+ C+SGKV+++RAEDH+EMREYNIDVL+D +E S  A+ RPYPIYPSKGGLNP FL 
Sbjct: 349 VGDLVCISGKVKSLRAEDHFEMREYNIDVLKDEEESSHRAQGRPYPIYPSKGGLNPKFLS 408

Query: 533 DIIARF--VLP 541
           D+I+R   VLP
Sbjct: 409 DVISRALRVLP 419