Miyakogusa Predicted Gene
- Lj0g3v0108809.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0108809.1 Non Chatacterized Hit- tr|B9EVV4|B9EVV4_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,87.76,0.0000000000005,seg,NULL,
NODE_37432_length_2667_cov_67.631424.path2.1
(340 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24706.2 | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWAR... 177 8e-45
AT1G24706.1 | Symbols: THO2, AtTHO2 | THO2 | chr1:8742210-875524... 177 9e-45
>AT1G24706.2 | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD
LENGTH=1823
Length = 1823
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 191/345 (55%), Gaps = 60/345 (17%)
Query: 1 MFTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKXXXXXXXXXXXXRKPSWVTDEEFGM 60
M TKIS VFPVTRK+GINLEKR KIK DEREDLK RKP WVTDEEF M
Sbjct: 1162 MLTKISGVFPVTRKTGINLEKRATKIKNDEREDLKVLATGVGAALSARKPHWVTDEEFSM 1221
Query: 61 GYLELKPAPSMTKSSAGTSVTVQSGISLGVSQTE-----SASGKHLDSGNTVKDQITRTK 115
G+LELK P T A + Q+G+ +GVSQ E + + +SG KDQ+ +TK
Sbjct: 1222 GFLELKAPPVHTPKHASS----QNGLLVGVSQGEPTGERATVNQQPESGGLGKDQMLKTK 1277
Query: 116 TADGKSERSESITAMKSDSGHVKIKGSSIVNGLDAQSSLPSSAGQSGTSK-SGETPKQVE 174
DG R+ESI + KSD GH+K KG N LD+Q PS + +S K + ETP+ +
Sbjct: 1278 PLDG---RTESIPS-KSDQGHLKSKGG---NPLDSQ---PSISKKSMEQKETDETPRISD 1327
Query: 175 ESIIRASDEHATRTAESRTSAKRSVPAGSLSKPSKQDPAKEDGRSGKPVTRASGSMSSDK 234
E+ ++ + +++ AE + S+KR S++K +KQD K+DG+SGK + R S ++DK
Sbjct: 1328 ENPVKPASKYS--EAELKASSKR---GASVNKSAKQDFGKDDGKSGKAIGRTS---TADK 1379
Query: 235 DIQPHASEGRHXXXXXXXXXXXXXXXXXXXXKAPSAKVSFDGPGNESKADIGASKSSDIR 294
D+ + E R KA S+ + N S A G+SK
Sbjct: 1380 DL--NYLESRQ----------------SGLTKALSSTAA-----NGSIA-TGSSKV---- 1411
Query: 295 ASMGKDDGNDITDFTRGSSRVVHSPRHENTVTSKSSDKSQKRASS 339
KDDG + D + SSR VHSPRHE + +SSD+ QKRA++
Sbjct: 1412 ----KDDGAEALDAQKQSSRTVHSPRHEIVTSVRSSDRLQKRANA 1452
>AT1G24706.1 | Symbols: THO2, AtTHO2 | THO2 | chr1:8742210-8755243
FORWARD LENGTH=1804
Length = 1804
Score = 177 bits (449), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 191/345 (55%), Gaps = 60/345 (17%)
Query: 1 MFTKISSVFPVTRKSGINLEKRVAKIKGDEREDLKXXXXXXXXXXXXRKPSWVTDEEFGM 60
M TKIS VFPVTRK+GINLEKR KIK DEREDLK RKP WVTDEEF M
Sbjct: 1162 MLTKISGVFPVTRKTGINLEKRATKIKNDEREDLKVLATGVGAALSARKPHWVTDEEFSM 1221
Query: 61 GYLELKPAPSMTKSSAGTSVTVQSGISLGVSQTE-----SASGKHLDSGNTVKDQITRTK 115
G+LELK P T A + Q+G+ +GVSQ E + + +SG KDQ+ +TK
Sbjct: 1222 GFLELKAPPVHTPKHASS----QNGLLVGVSQGEPTGERATVNQQPESGGLGKDQMLKTK 1277
Query: 116 TADGKSERSESITAMKSDSGHVKIKGSSIVNGLDAQSSLPSSAGQSGTSK-SGETPKQVE 174
DG R+ESI + KSD GH+K KG N LD+Q PS + +S K + ETP+ +
Sbjct: 1278 PLDG---RTESIPS-KSDQGHLKSKGG---NPLDSQ---PSISKKSMEQKETDETPRISD 1327
Query: 175 ESIIRASDEHATRTAESRTSAKRSVPAGSLSKPSKQDPAKEDGRSGKPVTRASGSMSSDK 234
E+ ++ + +++ AE + S+KR S++K +KQD K+DG+SGK + R S ++DK
Sbjct: 1328 ENPVKPASKYS--EAELKASSKR---GASVNKSAKQDFGKDDGKSGKAIGRTS---TADK 1379
Query: 235 DIQPHASEGRHXXXXXXXXXXXXXXXXXXXXKAPSAKVSFDGPGNESKADIGASKSSDIR 294
D+ + E R KA S+ + N S A G+SK
Sbjct: 1380 DL--NYLESRQ----------------SGLTKALSSTAA-----NGSIA-TGSSKV---- 1411
Query: 295 ASMGKDDGNDITDFTRGSSRVVHSPRHENTVTSKSSDKSQKRASS 339
KDDG + D + SSR VHSPRHE + +SSD+ QKRA++
Sbjct: 1412 ----KDDGAEALDAQKQSSRTVHSPRHEIVTSVRSSDRLQKRANA 1452