Miyakogusa Predicted Gene

Lj0g3v0108549.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0108549.1 Non Chatacterized Hit- tr|H3JK24|H3JK24_STRPU
Uncharacterized protein OS=Strongylocentrotus
purpurat,28.14,1e-17,HEAT_REPEAT,HEAT, type 2; no
description,Armadillo-like helical; seg,NULL; ARM
repeat,Armadillo-type,CUFF.6242.1
         (274 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16210.1 | Symbols:  | HEAT repeat-containing protein | chr5:...   345   1e-95

>AT5G16210.1 | Symbols:  | HEAT repeat-containing protein |
            chr5:5290999-5297779 REVERSE LENGTH=1180
          Length = 1180

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 186/290 (64%), Positives = 219/290 (75%), Gaps = 28/290 (9%)

Query: 1    MIFEILWEMVVSTNVNIKINAAKLLKAIVPYIDAKVASAHALPALVTLGSDQNLNVKGAS 60
            MIF ILWEMVV +   +KINAAKLLK IVPYIDAKVASA+ LPAL+TLGSDQNLNVK AS
Sbjct: 893  MIFGILWEMVVDSTAELKINAAKLLKTIVPYIDAKVASANVLPALITLGSDQNLNVKYAS 952

Query: 61   IDAFGAVAQHFKNEMIVDKIRVQMGAFLEDGSHETTIAVIHALVVAIPHTTEQLRDYLLS 120
            IDAFG+VAQHFK +MIVDKI VQM AF+EDGSHE  IAVI AL+VAIPHTTE+LRDYLLS
Sbjct: 953  IDAFGSVAQHFKVDMIVDKILVQMDAFMEDGSHEAIIAVIRALLVAIPHTTERLRDYLLS 1012

Query: 121  KISQLTAVTTAASSDVMRRQERANAFCEAIRALDATDLPANSIQDFLLPAIQNLLKDSDA 180
            KI QL+A + ++S+DV RR+ERANAFCEAIRALDATDL   S++++LLPAIQNLLKD DA
Sbjct: 1013 KILQLSA-SPSSSTDVNRRRERANAFCEAIRALDATDLSQTSVKEYLLPAIQNLLKDPDA 1071

Query: 181  LDPAHREALEIIMKEXXXXXXXXXXXXKVMG--------LSNFFGER---GKKDSTEAPS 229
            LDPAH+EALEIIMKE            K MG        +++ FGE    GKK++TE+  
Sbjct: 1072 LDPAHKEALEIIMKE--RSGGTFEAISKAMGAHLGIASSVTSLFGEGGLLGKKEATES-- 1127

Query: 230  ERVVSPRAATSQVP---------AEDTRFRRIMLGHFGEILRGKGKSQEE 270
                +P + T Q P         +EDTRFRRIM G+F E+LR K K+Q+E
Sbjct: 1128 ---TAPGSPTGQGPESPKVVAAASEDTRFRRIMRGNFTEMLRSKAKTQDE 1174