Miyakogusa Predicted Gene

Lj0g3v0108539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0108539.1 Non Chatacterized Hit- tr|I1K1M8|I1K1M8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,95.49,0,ARM
repeat,Armadillo-type fold; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; no description,Arma,CUFF.6241.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16210.1 | Symbols:  | HEAT repeat-containing protein | chr5:...   235   9e-63

>AT5G16210.1 | Symbols:  | HEAT repeat-containing protein |
           chr5:5290999-5297779 REVERSE LENGTH=1180
          Length = 1180

 Score =  235 bits (599), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 123/133 (92%), Positives = 127/133 (95%)

Query: 1   MCAIEHHPDSTTRDSLTHTLFNLIKRPDEQQRRIIMDACVSLSKNVGEMRTETELLTQCW 60
           MCAIE HP S+TRDSLTHTLFNLIKRPDEQQRRIIMDACVSLS+NVGEMRTETELL QCW
Sbjct: 479 MCAIERHPVSSTRDSLTHTLFNLIKRPDEQQRRIIMDACVSLSRNVGEMRTETELLPQCW 538

Query: 61  EQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLIEDSATIVREAAAHNLAKL 120
           EQINH YEERRLLVAQSCGELAE+VRPEIRDSLILSIVQQLIEDSAT+VREAAAHNLA L
Sbjct: 539 EQINHTYEERRLLVAQSCGELAEYVRPEIRDSLILSIVQQLIEDSATVVREAAAHNLALL 598

Query: 121 LPLFPNMDKYFKV 133
           LPLFPN DKYFKV
Sbjct: 599 LPLFPNTDKYFKV 611