Miyakogusa Predicted Gene

Lj0g3v0107649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107649.1 tr|Q9FPI0|Q9FPI0_ARATH 3'-5'-exoribonuclease
family protein OS=Arabidopsis thaliana
GN=AT3g07750/F17,77.78,4e-19,coiled-coil,NULL; seg,NULL,CUFF.6156.1
         (62 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07750.2 | Symbols:  | 3'-5'-exoribonuclease family protein |...    82   6e-17
AT3G07750.1 | Symbols:  | 3'-5'-exoribonuclease family protein |...    82   6e-17

>AT3G07750.2 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr3:2473486-2475218 FORWARD LENGTH=286
          Length = 286

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 45/49 (91%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSISVNR GHICG+TKR G+GLDPS++LDMISVAKHV+E L++KL
Sbjct: 224 MSSAVSISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKL 272


>AT3G07750.1 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr3:2473486-2475218 FORWARD LENGTH=286
          Length = 286

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 45/49 (91%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSISVNR GHICG+TKR G+GLDPS++LDMISVAKHV+E L++KL
Sbjct: 224 MSSAVSISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKL 272