Miyakogusa Predicted Gene

Lj0g3v0107629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107629.1 Non Chatacterized Hit- tr|G7LAI0|G7LAI0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,60.44,6e-18,DLC,Dynein light chain, type 1/2; no
description,Dynein light chain, type 1/2; Dynein_light,Dynein
l,CUFF.6154.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23220.1 | Symbols:  | Dynein light chain type 1 family prote...   154   2e-38
AT5G20110.1 | Symbols:  | Dynein light chain type 1 family prote...   109   5e-25
AT3G16120.1 | Symbols:  | Dynein light chain type 1 family prote...    65   1e-11
AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    64   3e-11
AT4G15930.1 | Symbols:  | Dynein light chain type 1 family prote...    64   3e-11
AT4G27360.1 | Symbols:  | Dynein light chain type 1 family prote...    64   4e-11

>AT1G23220.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr1:8242614-8244136 FORWARD LENGTH=129
          Length = 129

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 92/137 (67%), Gaps = 11/137 (8%)

Query: 4   GAEKELDRRSKFLHSLIQNKKKTNTEQHDDGDDSTSSSLNRSNVHVRACDMPLPLQNHAF 63
           G E EL+RRSKFL+SLIQ KK    EQ D  D+         NV VRA DMPLP QN AF
Sbjct: 3   GVELELERRSKFLNSLIQKKKAK--EQQDQKDEF--------NVRVRASDMPLPQQNRAF 52

Query: 64  QCARQHLDSMPXXXXXXXXXXXXXXXEFDSSYGPAWHCIVGTSFGSYVTHSVGGFLYFSI 123
             +R+ L++ P               +FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF I
Sbjct: 53  SLSREILNATPGKADNKRLAHALKK-DFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQI 111

Query: 124 DKVFILLFKTAVQPLNH 140
           DKV++LLFKTAV+PL+ 
Sbjct: 112 DKVYVLLFKTAVEPLDQ 128


>AT5G20110.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr5:6791542-6793253 REVERSE LENGTH=209
          Length = 209

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 46  NVHVRACDMPLPLQNHAFQCARQHLDSMPXXXXXXXXXXXXXXXEFDSSYGPAWHCIVGT 105
            V + A DMP  +Q HAF+CAR  LDS+                EFD  YGPAWHCIVG+
Sbjct: 116 TVRILAADMPGFMQAHAFRCARMTLDSL--EKFSSKHMAFNLKKEFDKGYGPAWHCIVGS 173

Query: 106 SFGSYVTHSVGGFLYFSIDKVFILLFKTAVQP 137
           SFGS+VTHS G F+YFS+DK+++LLFKT V+P
Sbjct: 174 SFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRP 205


>AT3G16120.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr3:5465035-5465395 FORWARD LENGTH=93
          Length = 93

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 49  VRACDMPLPLQNHAFQCARQHLDSMPXXXXXXXXXXXXXXXEFDSSYGPAWHCIVGTSFG 108
           V   DMP+ +Q  A + A Q LD                  EFD  YG  W C+VGT+FG
Sbjct: 8   VEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKK--EFDERYGSGWQCVVGTNFG 65

Query: 109 SYVTHSVGGFLYFSIDKVFILLFKTA 134
            + THS G F+YF +  +  L+FK A
Sbjct: 66  CFFTHSKGTFIYFHLGTLNFLIFKGA 91


>AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
           guanyl-nucleotide exchange factor 11 |
           chr1:19458844-19459235 REVERSE LENGTH=94
          Length = 94

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 49  VRACDMPLPLQNHAFQCARQHLDSMPXXXXXXXXXXXXXXXEFDSSYGPAWHCIVGTSFG 108
           V   DMP+ +Q  A   A Q LD                  EFD  YG  W C+VG++FG
Sbjct: 8   VEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKK--EFDERYGSGWQCVVGSNFG 65

Query: 109 SYVTHSVGGFLYFSIDKVFILLFKTAVQP 137
            + THS G F+YF ++ +  L+FK A  P
Sbjct: 66  CFFTHSKGTFIYFQLETLKFLIFKGASTP 94


>AT4G15930.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:9036344-9037825 FORWARD LENGTH=123
          Length = 123

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 49  VRACDMPLPLQNHAFQCARQHLDSMPXXXXXXXXXXXXXXXEFDSSYGPAWHCIVGTSFG 108
           +++ DM   +Q  A + A    +                  EFD  +G  WHCIVG +FG
Sbjct: 42  IKSADMKDDMQKEAIEIAISAFEKY----SVEKDIAENIKKEFDKKHGATWHCIVGRNFG 97

Query: 109 SYVTHSVGGFLYFSIDKVFILLFKTA 134
           SYVTH    F+YF +D+  +LLFK+ 
Sbjct: 98  SYVTHETNHFVYFYLDQKAVLLFKSG 123


>AT4G27360.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:13694032-13694517 FORWARD LENGTH=103
          Length = 103

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%)

Query: 90  EFDSSYGPAWHCIVGTSFGSYVTHSVGGFLYFSIDKVFILLFKTAV 135
           EFD SYG  W CIVGT FGS+VTH  G F++FS+  + ILLFK +V
Sbjct: 47  EFDRSYGSGWQCIVGTHFGSFVTHCSGCFIHFSVGSLTILLFKGSV 92