Miyakogusa Predicted Gene

Lj0g3v0107329.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107329.2 Non Chatacterized Hit- tr|D7M148|D7M148_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,44.16,1e-17,seg,NULL; coiled-coil,NULL,CUFF.6126.2
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13120.1 | Symbols: emb1745 | embryo defective 1745 | chr1:44...   119   1e-27
AT4G05523.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    58   6e-09

>AT1G13120.1 | Symbols: emb1745 | embryo defective 1745 |
           chr1:4469334-4472775 REVERSE LENGTH=611
          Length = 611

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 5/145 (3%)

Query: 17  LAVAGKRITCDELYLXXXXXXXVMSTFEGQP-YLMDEVEEVEGALFELTHEHQLRVKDEI 75
           +  AGKR  CDELYL           F+ +P Y+M+++   E AL+E+ ++HQ  +KD+I
Sbjct: 93  ICTAGKRFACDELYLSDESDEE----FDHEPEYMMNKLGLAESALYEVINDHQTEIKDDI 148

Query: 76  RSKISVLETALVMESENSTSSLLRVEKYKETRRELDKKFDTQYQRRIAEELDNHLTVVQQ 135
           R+++SV+ET ++ E E S S++ RVEKY ETR+E+++K D QYQR++AE LD HLT VQ+
Sbjct: 149 RNQVSVVETEIMNEIETSLSAIARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQR 208

Query: 136 DXXXXXXXXXXXXXNDAANEEAKRK 160
           +             ++ A EEA+RK
Sbjct: 209 EHKIKSQIEERKIRSEEAQEEARRK 233


>AT4G05523.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: embryo defective 1745 (TAIR:AT1G13120.1); Has 30201
           Blast hits to 17322 proteins in 780 species: Archae -
           12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
           Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
           (source: NCBI BLink). | chr4:2808054-2809025 REVERSE
           LENGTH=221
          Length = 221

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 69/113 (61%), Gaps = 9/113 (7%)

Query: 24  ITCDELYLXXXXXXXVMSTFEGQPYLMDEVEEVEGALFELTHEHQLRVKDEIRSKISVLE 83
            TCD+LYL            E +  +M+++     AL E  ++HQ +  ++I++++SV+E
Sbjct: 90  CTCDDLYLSDDDEFD----HELEYTIMNKMG---PALAE--NDHQTKSTEDIQNQVSVVE 140

Query: 84  TALVMESENSTSSLLRVEKYKETRRELDKKFDTQYQRRIAEELDNHLTVVQQD 136
             +  E E + S++  VEKY+E RRE+++  D QY+R ++E L+ H+ VV+++
Sbjct: 141 KEIRNEIERALSAIALVEKYRENRREVERSLDLQYKREVSEALETHMNVVKRE 193