Miyakogusa Predicted Gene

Lj0g3v0107179.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107179.1 Non Chatacterized Hit- tr|B9R7B9|B9R7B9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,32.82,1e-18,seg,NULL,CUFF.6119.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42900.3 | Symbols:  | cold regulated gene 27 | chr5:17198366...    89   2e-18
AT5G42900.2 | Symbols:  | cold regulated gene 27 | chr5:17198366...    87   8e-18
AT5G42900.1 | Symbols: COR27 | cold regulated gene 27 | chr5:171...    87   8e-18

>AT5G42900.3 | Symbols:  | cold regulated gene 27 |
           chr5:17198366-17199712 REVERSE LENGTH=245
          Length = 245

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 97/195 (49%), Gaps = 29/195 (14%)

Query: 9   MQTDEWTDEKHSMYIKSIEASFVSQLY---------ESKQPATTYG--------QFKVHR 51
           M+T EWT+EKHS+Y+KS+EASFV QLY         E+   +T +G        QFKV  
Sbjct: 44  MET-EWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQEQFKVLH 102

Query: 52  GGFWQKISFERENPQMSSTSRINQCADLTANPWIQHYRSSRVAAPSLTSE-----VVKFG 106
            GFWQKI+ ++   +++     N   +   +PWI+HY+        +T E     V    
Sbjct: 103 DGFWQKINVKQPEHRINGRHGGN-SHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 161

Query: 107 QKKGISSKSGQFHLSE--SYVSDQDMICDDTEMSDQNFIDXXXXXXXXXSIGNVKRHTSM 164
            KKGI S      L +  S+  D D I    E+SDQNF++         S    K  T M
Sbjct: 162 GKKGICSSGSASSLKQLSSHSRDHDQISVGEEVSDQNFVNEGIKGENGSS---KKMKTVM 218

Query: 165 ATDAKANDQMVPIRK 179
            +++ + DQ+VP+ K
Sbjct: 219 MSESSSTDQVVPLNK 233


>AT5G42900.2 | Symbols:  | cold regulated gene 27 |
           chr5:17198366-17199712 REVERSE LENGTH=246
          Length = 246

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 30/196 (15%)

Query: 9   MQTDEWTDEKHSMYIKSIEASFVSQLY---------ESKQPATTYG--------QFKVHR 51
           M+T EWT+EKHS+Y+KS+EASFV QLY         E+   +T +G        QFKV  
Sbjct: 44  MET-EWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQEQFKVLH 102

Query: 52  GGFWQKISFERENPQMSSTSRINQCADLTANPWIQHYRSSRVAAPSLTSE-----VVKFG 106
            GFWQKI+ ++   +++     N   +   +PWI+HY+        +T E     V    
Sbjct: 103 DGFWQKINVKQPEHRINGRHGGN-SHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 161

Query: 107 QKKGISSKSGQFHLSE--SYVSDQDMI-CDDTEMSDQNFIDXXXXXXXXXSIGNVKRHTS 163
            KKGI S      L +  S+  D D I   + E+SDQNF++         S    K  T 
Sbjct: 162 GKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENGSS---KKMKTV 218

Query: 164 MATDAKANDQMVPIRK 179
           M +++ + DQ+VP+ K
Sbjct: 219 MMSESSSTDQVVPLNK 234


>AT5G42900.1 | Symbols: COR27 | cold regulated gene 27 |
           chr5:17198366-17199712 REVERSE LENGTH=246
          Length = 246

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 30/196 (15%)

Query: 9   MQTDEWTDEKHSMYIKSIEASFVSQLY---------ESKQPATTYG--------QFKVHR 51
           M+T EWT+EKHS+Y+KS+EASFV QLY         E+   +T +G        QFKV  
Sbjct: 44  MET-EWTNEKHSLYLKSMEASFVDQLYNSLGALGKNENVSESTRFGSGRKPSQEQFKVLH 102

Query: 52  GGFWQKISFERENPQMSSTSRINQCADLTANPWIQHYRSSRVAAPSLTSE-----VVKFG 106
            GFWQKI+ ++   +++     N   +   +PWI+HY+        +T E     V    
Sbjct: 103 DGFWQKINVKQPEHRINGRHGGN-SHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 161

Query: 107 QKKGISSKSGQFHLSE--SYVSDQDMI-CDDTEMSDQNFIDXXXXXXXXXSIGNVKRHTS 163
            KKGI S      L +  S+  D D I   + E+SDQNF++         S    K  T 
Sbjct: 162 GKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENGSS---KKMKTV 218

Query: 164 MATDAKANDQMVPIRK 179
           M +++ + DQ+VP+ K
Sbjct: 219 MMSESSSTDQVVPLNK 234