Miyakogusa Predicted Gene

Lj0g3v0107099.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107099.1 Non Chatacterized Hit- tr|I3SKZ0|I3SKZ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.05,0,no
description,NULL; FIBRILLARIN,Fibrillarin, conserved site; RRNA
2-O-METHYLTRANSFERASE FIBRILLARIN,CUFF.6117.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25630.1 | Symbols: FIB2, ATFIB2 | fibrillarin 2 | chr4:13074...   394   e-110
AT5G52470.1 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibri...   390   e-109
AT5G52490.1 | Symbols:  | Fibrillarin family protein | chr5:2129...   320   5e-88
AT5G52470.2 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibri...   314   4e-86

>AT4G25630.1 | Symbols: FIB2, ATFIB2 | fibrillarin 2 |
           chr4:13074239-13076205 FORWARD LENGTH=320
          Length = 320

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/210 (90%), Positives = 199/210 (94%), Gaps = 1/210 (0%)

Query: 57  MKGGSRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVW 116
           MKGGS+V+VEPHRH G+FIAKG KEDALVTKNLVPGEAVYNEKR++VQ EDGTK EYRVW
Sbjct: 74  MKGGSKVIVEPHRHAGVFIAKG-KEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVW 132

Query: 117 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG 176
           NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSG
Sbjct: 133 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSG 192

Query: 177 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTG 236
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVAQPDQARIL LNASYFLK+G
Sbjct: 193 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSG 252

Query: 237 GHFVISIKANCIDSTVPAETVFVNEVNKLK 266
           GHFVISIKANCIDSTVPAE VF  EV KL+
Sbjct: 253 GHFVISIKANCIDSTVPAEAVFQTEVKKLQ 282


>AT5G52470.1 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 |
           fibrillarin 1 | chr5:21294290-21296509 FORWARD
           LENGTH=308
          Length = 308

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/210 (90%), Positives = 199/210 (94%), Gaps = 1/210 (0%)

Query: 57  MKGGSRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVW 116
           MKGGS+V+VEPHRH G+FIAKG KEDALVTKNLVPGEAVYNEKR++VQ EDGTK EYRVW
Sbjct: 63  MKGGSKVIVEPHRHAGVFIAKG-KEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVW 121

Query: 117 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG 176
           NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSG
Sbjct: 122 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSG 181

Query: 177 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTG 236
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVAQPDQARIL LNAS+FLKTG
Sbjct: 182 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTG 241

Query: 237 GHFVISIKANCIDSTVPAETVFVNEVNKLK 266
           GHFVISIKANCIDSTV AE VF +EV KL+
Sbjct: 242 GHFVISIKANCIDSTVAAEAVFQSEVKKLQ 271


>AT5G52490.1 | Symbols:  | Fibrillarin family protein |
           chr5:21298857-21300239 FORWARD LENGTH=292
          Length = 292

 Score =  320 bits (821), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 157/211 (74%), Positives = 178/211 (84%), Gaps = 1/211 (0%)

Query: 57  MKGGSRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVW 116
           +KGGS+V+V PHRH G+F+AK  K DALVTKNLVPGE +YNEKR+ VQ ED +  EYRVW
Sbjct: 53  IKGGSKVLVTPHRHAGVFVAKS-KADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVW 111

Query: 117 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG 176
           NP RSKLA AI  GVDNIWIKPG KVLYLGA+SG TVSHVSDIVGP G VYAVE S   G
Sbjct: 112 NPHRSKLADAITTGVDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICG 171

Query: 177 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTG 236
           + L+NMA+KRTNVIPIIEDARHPAKYRMLVGMVD++FSDV  P+QA IL LNASYFLK+G
Sbjct: 172 KVLMNMAEKRTNVIPIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSG 231

Query: 237 GHFVISIKANCIDSTVPAETVFVNEVNKLKV 267
           GHF+ISIKAN IDST+ AETV+  EV KL++
Sbjct: 232 GHFMISIKANSIDSTIAAETVYQMEVEKLQM 262


>AT5G52470.2 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 |
           fibrillarin 1 | chr5:21294290-21296409 FORWARD
           LENGTH=273
          Length = 273

 Score =  314 bits (804), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 152/165 (92%), Positives = 159/165 (96%), Gaps = 1/165 (0%)

Query: 57  MKGGSRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVW 116
           MKGGS+V+VEPHRH G+FIAKG KEDALVTKNLVPGEAVYNEKR++VQ EDGTK EYRVW
Sbjct: 63  MKGGSKVIVEPHRHAGVFIAKG-KEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVW 121

Query: 117 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG 176
           NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSG
Sbjct: 122 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSG 181

Query: 177 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQ 221
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVAQPDQ
Sbjct: 182 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226