Miyakogusa Predicted Gene

Lj0g3v0106939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106939.1 Non Chatacterized Hit- tr|I3SP13|I3SP13_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,78.95,1e-17,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; no descrip,CUFF.6107.1
         (83 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage ...    83   3e-17
AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation s...    50   3e-07
AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation s...    50   3e-07
AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation s...    50   3e-07

>AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and
           polyadenylation specificity factor 73 kDa subunit-II |
           chr2:320597-323845 FORWARD LENGTH=613
          Length = 613

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 45/57 (78%)

Query: 24  LVLKIFHCRSTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           L L +    STYATTIR SKY REREFL+AVHKCV+GGGK LIP+FALGRAQ   ++
Sbjct: 194 LQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCML 250


>AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 33  STYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           ST    +  S++ RE+ F   +H  V+ GG+VLIP FALGRAQ   L+
Sbjct: 215 STSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLI 262


>AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 33  STYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           ST    +  S++ RE+ F   +H  V+ GG+VLIP FALGRAQ   L+
Sbjct: 215 STSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLI 262


>AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 33  STYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           ST    +  S++ RE+ F   +H  V+ GG+VLIP FALGRAQ   L+
Sbjct: 215 STSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLI 262