Miyakogusa Predicted Gene

Lj0g3v0106869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106869.1 Non Chatacterized Hit- tr|B9RVY3|B9RVY3_RICCO
Cleavage and polyadenylation specificity factor,
putat,83.02,0,CPSF100_C,Cleavage and polyadenylation specificity
factor 2, C-terminal; RMMBL,RNA-metabolising meta,CUFF.6097.1
         (377 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleav...   610   e-175

>AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage
           and polyadenylation specificity factor 100 |
           chr5:8052550-8058147 FORWARD LENGTH=739
          Length = 739

 Score =  610 bits (1572), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 290/378 (76%), Positives = 330/378 (87%), Gaps = 4/378 (1%)

Query: 1   MLQADPPPKAVKVTVSKRVPLVGDELIAYEEEQNRIKKEEALKASLIKAEELKASHGADS 60
           MLQ+ PPPK VKVT+SKRVPL G+ELIAYEEEQNR+K+EEAL+ASL+K EE KASHG+D 
Sbjct: 365 MLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASHGSDD 424

Query: 61  NTSDPMVIDTGNNLIAPEVAGPRGGGYRDIFVDGFVPPSTSVAPMFPCYENTSEWDDFGE 120
           N+S+PM+IDT       +V G  G  Y+DI +DGFVPPS+SVAPMFP Y+NTSEWDDFGE
Sbjct: 425 NSSEPMIIDTKTT---HDVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEWDDFGE 481

Query: 121 VINPDDYVIKDEDMDQTAMHVGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCSLVY 180
           +INPDDYVIKDEDMD+ AMH GGD++G+LDE  ASL+LDT+PSKV+S+E  V V CSLV 
Sbjct: 482 IINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVSCSLVK 541

Query: 181 MDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKNVCPHVYAPQIEETIDV 240
           MD+EGRSDGRSIK++++HV+PLKLVLVH  AEATEHLKQHCL N+CPHVYAPQIEET+DV
Sbjct: 542 MDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIEETVDV 601

Query: 241 TSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKAENDTLSLLPVSGATPPHKSVL 300
           TSDLCAYKVQLSEKLMSNV+FKKLGD EVAWVD+EVGK E D  SLLP+ GA  PHK VL
Sbjct: 602 TSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASPHKPVL 661

Query: 301 VGDLKLADFKQFLSSKGVQVEFA-GGALRCGEYVTVRKVGDASQKGAGSGTQQIIIEGPL 359
           VGDLK+ADFKQFLSSKGVQVEFA GGALRCGEYVT+RKVG   QKG  SG QQI+IEGPL
Sbjct: 662 VGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQILIEGPL 721

Query: 360 CEDYYKIREYLYSQFYLL 377
           CEDYYKIR+YLYSQFYLL
Sbjct: 722 CEDYYKIRDYLYSQFYLL 739