Miyakogusa Predicted Gene

Lj0g3v0106569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106569.1 Non Chatacterized Hit- tr|D8U2G2|D8U2G2_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,45.83,4e-19,Prefoldin_2,Prefoldin beta-like; coiled-coil,NULL;
seg,NULL; Prefoldin,Prefoldin; SUBFAMILY NOT NAME,CUFF.6099.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08780.1 | Symbols: AIP3, PFD4 | ABI3-interacting protein 3 |...   174   2e-44

>AT1G08780.1 | Symbols: AIP3, PFD4 | ABI3-interacting protein 3 |
           chr1:2809925-2811126 REVERSE LENGTH=129
          Length = 129

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 100/129 (77%), Gaps = 2/129 (1%)

Query: 1   MQHQGG--GSETEVTWEDQQNINKFGRLNNRLHELDDEIKVAKETNENFEDASNELILTD 58
           MQ QG   GSE EVTWEDQQNIN F RLNNR+H+LDD+IK AKE  EN EDA NELIL D
Sbjct: 1   MQQQGSKSGSEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILAD 60

Query: 59  EDVVRFQIGEVFAHVPKDEVESRIEQMQEVTSXXXXXXXXXXXSVLAQMAELKKVLYAKF 118
           E++VRFQIGEVFAHVP+D+VE++IE+M+E T            S++ QMA LKKVLYAKF
Sbjct: 61  EEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKF 120

Query: 119 NDSINLEEE 127
            DSINLEE+
Sbjct: 121 KDSINLEED 129