Miyakogusa Predicted Gene
- Lj0g3v0106559.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0106559.1 Non Chatacterized Hit- tr|C5YRD5|C5YRD5_SORBI
Putative uncharacterized protein Sb08g020500
OS=Sorghu,37.25,7e-19,seg,NULL,CUFF.6070.1
(276 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 | ch... 128 5e-30
AT1G06770.2 | Symbols: DRIP1 | DREB2A-interacting protein 1 | ch... 124 8e-29
AT1G06770.1 | Symbols: DRIP1 | DREB2A-interacting protein 1 | ch... 123 2e-28
AT3G23060.1 | Symbols: | RING/U-box superfamily protein | chr3:... 81 1e-15
AT5G13250.1 | Symbols: | RING finger protein | chr5:4234486-424... 74 8e-14
AT1G28080.1 | Symbols: | RING finger protein | chr1:9789826-979... 63 3e-10
>AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 |
chr2:13026444-13030363 FORWARD LENGTH=420
Length = 420
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 112/207 (54%), Gaps = 28/207 (13%)
Query: 9 EGKVDLWTPLNCLVEAANRTKSFKANSQATPVAELECPTTSHGGLDQPETTTKTGLPAFA 68
+ K+ LW PLN LV+ AN TK K+ E SH + +T TK
Sbjct: 205 DSKLHLWKPLNFLVDVANGTKDPKS----------ELGNASHNDVQGSKTKTKD------ 248
Query: 69 QNELNIPKCKIKDTGHKKLFGVDKDAKCVPSGPAKRKRLRPAGQKRAAASDMSASAPGML 128
+ KCK+++ + D + KR R + PG
Sbjct: 249 ----HKRKCKLEEE-----ISNNGDPTTSETATLKRTRRTRRKRSSTFGDSRIPLLPGAA 299
Query: 129 SATWGKCNRKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKLNL 188
S K R+N +WFSLVAS +Q+G+ASLPQI + YLRIRDG +PVSFIQKYL++KL+L
Sbjct: 300 SL---KQERRNGHVWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQKYLMRKLDL 356
Query: 189 ASETEVEIMCQGQPVLPSLQLHNVVDL 215
SE EVEI C G+PV+P+LQLH++VDL
Sbjct: 357 KSEDEVEITCMGEPVIPTLQLHSLVDL 383
>AT1G06770.2 | Symbols: DRIP1 | DREB2A-interacting protein 1 |
chr1:2079222-2080658 REVERSE LENGTH=307
Length = 307
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 114/209 (54%), Gaps = 22/209 (10%)
Query: 9 EGKVDLWTPLNCLVEAANRTKSFKANSQATPVAELECPTTSHGGLDQPETTTKTGLPAFA 68
+ K+D W PLN LVE AN TK K+ + S G + +K+ +
Sbjct: 82 DSKMD-WKPLNFLVEVANGTKPLKS-------------SASQG------SGSKSEHANVS 121
Query: 69 QNELNIPKCKIKDTGHKKLFGVDKDAKCVP--SGPAKRKRLRPAGQKRAAASDMSASAPG 126
+N+ K K K+ K DK P S KR+R +KR+A + +
Sbjct: 122 RNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLGDSRNLP 181
Query: 127 MLSATWGKCNRKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKL 186
+ K R+N P+WFSLVAS DQ+G SLPQI + +LRIRDG VSFIQKYL++KL
Sbjct: 182 QPDESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKL 241
Query: 187 NLASETEVEIMCQGQPVLPSLQLHNVVDL 215
+L SE E+EI C G+ V+P+L L+N+VDL
Sbjct: 242 DLESENEIEIKCMGEAVIPTLTLYNLVDL 270
>AT1G06770.1 | Symbols: DRIP1 | DREB2A-interacting protein 1 |
chr1:2079222-2081707 REVERSE LENGTH=421
Length = 421
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 115/209 (55%), Gaps = 22/209 (10%)
Query: 9 EGKVDLWTPLNCLVEAANRTKSFKANSQATPVAELECPTTSHGGLDQPETTTKTGLPAFA 68
+ K+D W PLN LVE AN TK K+++ S G + +K+ +
Sbjct: 196 DSKMD-WKPLNFLVEVANGTKPLKSSA-------------SQG------SGSKSEHANVS 235
Query: 69 QNELNIPKCKIKDTGHKKLFGVDKDAKCVP--SGPAKRKRLRPAGQKRAAASDMSASAPG 126
+N+ K K K+ K DK P S KR+R +KR+A + +
Sbjct: 236 RNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLGDSRNLP 295
Query: 127 MLSATWGKCNRKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKL 186
+ K R+N P+WFSLVAS DQ+G SLPQI + +LRIRDG VSFIQKYL++KL
Sbjct: 296 QPDESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKL 355
Query: 187 NLASETEVEIMCQGQPVLPSLQLHNVVDL 215
+L SE E+EI C G+ V+P+L L+N+VDL
Sbjct: 356 DLESENEIEIKCMGEAVIPTLTLYNLVDL 384
>AT3G23060.1 | Symbols: | RING/U-box superfamily protein |
chr3:8200868-8203116 FORWARD LENGTH=480
Length = 480
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%)
Query: 137 RKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKLNLASETEVEI 196
R N+P+WFSL S+ Q + LP I++C +R++D + VS+++KYL+ KL L SE +VEI
Sbjct: 360 RNNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEI 419
Query: 197 MCQGQPVLPSLQLHNVVD 214
+ +PV SL LHN+VD
Sbjct: 420 WLRDEPVCSSLTLHNLVD 437
>AT5G13250.1 | Symbols: | RING finger protein |
chr5:4234486-4241615 FORWARD LENGTH=387
Length = 387
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 137 RKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKLNLASET-EVE 195
R +S IWF L AS++Q + LPQI YLRI+DG + V + KYLV KL L E+ +VE
Sbjct: 271 RPHSGIWFLLQASQNQTVEPFLPQIPKSYLRIKDGKMTVRLLMKYLVNKLRLEHESQQVE 330
Query: 196 IMCQGQPVLPSLQLHNVVD 214
I C+GQ + P L L +V D
Sbjct: 331 IRCRGQELEPVLTLQHVRD 349
>AT1G28080.1 | Symbols: | RING finger protein |
chr1:9789826-9790918 FORWARD LENGTH=291
Length = 291
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 137 RKNSPIWFSLVASEDQKGDASLPQISSCYLRIRDGTVPVSFIQKYLVKKLNLASETEVEI 196
R +S +WF L AS+ Q+ + LPQ++ YLRI+DG + V + KYL+KKL L SE+EV I
Sbjct: 232 RPHSGLWFLLQASQFQEREPFLPQVNKSYLRIKDGRITVRLLIKYLMKKLELDSESEVNI 291