Miyakogusa Predicted Gene
- Lj0g3v0106359.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0106359.1 Non Chatacterized Hit- tr|J3LTZ8|J3LTZ8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,49.44,3e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Raffinose_syn,Raffinose
synthase,NODE_32364_length_1246_cov_522.880432.path2.1
(89 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G57520.1 | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:2... 109 3e-25
AT1G55740.1 | Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:2... 62 6e-11
AT5G20250.4 | Symbols: DIN10 | Raffinose synthase family protein... 56 6e-09
AT5G20250.3 | Symbols: DIN10 | Raffinose synthase family protein... 55 7e-09
AT5G20250.2 | Symbols: DIN10 | Raffinose synthase family protein... 55 7e-09
AT5G20250.1 | Symbols: DIN10 | Raffinose synthase family protein... 55 7e-09
AT4G01970.1 | Symbols: AtSTS, STS | stachyose synthase | chr4:85... 51 2e-07
>AT3G57520.1 | Symbols: AtSIP2, SIP2 | seed imbibition 2 |
chr3:21288982-21292694 REVERSE LENGTH=773
Length = 773
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 69/104 (66%), Gaps = 15/104 (14%)
Query: 1 MFNTGGAVEQVEINK-----PELFDGEVSSN----------TATIALKVRGNGRFGVYSS 45
MFN+ GA+E ++IN PE FDGE+SS TA +++ VRG GRFG YSS
Sbjct: 670 MFNSSGAIESIDINHVTDKNPEFFDGEISSASPALSDNRSPTALVSVSVRGCGRFGAYSS 729
Query: 46 QSPLKCAVDGSETDFFYDSETGLTTFLIPVPSEELYRWSIEIQV 89
Q PLKCAV+ +ETDF YD+E GL T +PV EE++RW +EI V
Sbjct: 730 QRPLKCAVESTETDFTYDAEVGLVTLNLPVTREEMFRWHVEILV 773
>AT1G55740.1 | Symbols: AtSIP1, SIP1 | seed imbibition 1 |
chr1:20835507-20838707 REVERSE LENGTH=754
Length = 754
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 1 MFNTGGAVEQVEINKPELFDGEVSSNTATIALKVRGNGRFGVYSS-QSPLKCAVDGSETD 59
MFN+GGA+ + +D E + +K+RG+G GVYSS + P VD + +
Sbjct: 674 MFNSGGAIVSLR------YDDE--GTKFVVRMKLRGSGLVGVYSSVRRPRSVTVDSDDVE 725
Query: 60 FFYDSETGLTTFLIPVPSEELYRWSIEIQ 88
+ Y+ E+GL TF + VP +ELY W + IQ
Sbjct: 726 YRYEPESGLVTFTLGVPEKELYLWDVVIQ 754
>AT5G20250.4 | Symbols: DIN10 | Raffinose synthase family protein |
chr5:6833730-6836635 FORWARD LENGTH=844
Length = 844
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 1 MFNTGGAVEQVEINKPELFDGEVSSNTATIALKVRGNGRFGVYSSQSPLKCAVDGSETDF 60
M+N+GGA+E + ++ + ++V+G G+FG YSS P +C V+ +E F
Sbjct: 765 MYNSGGAIEGLRYEAEKM----------KVVMEVKGCGKFGSYSSVKPKRCVVESNEIAF 814
Query: 61 FYDSETGLTTF---LIPVPSEELYRWSIEI 87
YDS +GL TF +P+ ++ + +E+
Sbjct: 815 EYDSSSGLVTFELDKMPIENKRFHLIQVEL 844
>AT5G20250.3 | Symbols: DIN10 | Raffinose synthase family protein |
chr5:6834207-6836635 FORWARD LENGTH=749
Length = 749
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 1 MFNTGGAVEQVEINKPELFDGEVSSNTATIALKVRGNGRFGVYSSQSPLKCAVDGSETDF 60
M+N+GGA+E + ++ + ++V+G G+FG YSS P +C V+ +E F
Sbjct: 670 MYNSGGAIEGLRYEAEKM----------KVVMEVKGCGKFGSYSSVKPKRCVVESNEIAF 719
Query: 61 FYDSETGLTTF---LIPVPSEELYRWSIEI 87
YDS +GL TF +P+ ++ + +E+
Sbjct: 720 EYDSSSGLVTFELDKMPIENKRFHLIQVEL 749
>AT5G20250.2 | Symbols: DIN10 | Raffinose synthase family protein |
chr5:6834207-6836635 FORWARD LENGTH=749
Length = 749
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 1 MFNTGGAVEQVEINKPELFDGEVSSNTATIALKVRGNGRFGVYSSQSPLKCAVDGSETDF 60
M+N+GGA+E + ++ + ++V+G G+FG YSS P +C V+ +E F
Sbjct: 670 MYNSGGAIEGLRYEAEKM----------KVVMEVKGCGKFGSYSSVKPKRCVVESNEIAF 719
Query: 61 FYDSETGLTTF---LIPVPSEELYRWSIEI 87
YDS +GL TF +P+ ++ + +E+
Sbjct: 720 EYDSSSGLVTFELDKMPIENKRFHLIQVEL 749
>AT5G20250.1 | Symbols: DIN10 | Raffinose synthase family protein |
chr5:6834207-6836635 FORWARD LENGTH=749
Length = 749
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 1 MFNTGGAVEQVEINKPELFDGEVSSNTATIALKVRGNGRFGVYSSQSPLKCAVDGSETDF 60
M+N+GGA+E + ++ + ++V+G G+FG YSS P +C V+ +E F
Sbjct: 670 MYNSGGAIEGLRYEAEKM----------KVVMEVKGCGKFGSYSSVKPKRCVVESNEIAF 719
Query: 61 FYDSETGLTTF---LIPVPSEELYRWSIEI 87
YDS +GL TF +P+ ++ + +E+
Sbjct: 720 EYDSSSGLVTFELDKMPIENKRFHLIQVEL 749
>AT4G01970.1 | Symbols: AtSTS, STS | stachyose synthase |
chr4:854073-856953 REVERSE LENGTH=876
Length = 876
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 1 MFNTGGAVEQVEINKPELFDGEVSSNTATIALKVRGNGRFGVYSSQSPLKCAVDGSETDF 60
MFN G V+ +++ + +I + V+G GRF YSS +P+KC ++ E +F
Sbjct: 799 MFNCVGTVQDMKV-----------TGDNSIRVDVKGEGRFMAYSSSAPVKCYLNDKEAEF 847
Query: 61 FYDSETGLTTFLIP 74
++ ETG +F +P
Sbjct: 848 KWEEETGKLSFFVP 861