Miyakogusa Predicted Gene

Lj0g3v0105289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0105289.1 Non Chatacterized Hit- tr|I1KC34|I1KC34_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,79.67,0,SNURPORTIN1
(RNUT1 PROTEIN) (RNA, U TRANSPORTER 1),NULL; DNA ligase/mRNA capping
enzyme, catalytic d,CUFF.5997.1
         (417 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24880.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   572   e-163

>AT4G24880.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:12808593-12811218 FORWARD LENGTH=417
          Length = 417

 Score =  572 bits (1474), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/417 (66%), Positives = 339/417 (81%), Gaps = 4/417 (0%)

Query: 1   MAPHDLRRPFKRPAISDQERRRQHSLLRQAQNRLDAQRHARFLASTVFSLSSQTPD-SSE 59
           MAPH++RRPFKR  ISDQ++RR+ SL+RQ Q+R DAQ+ AR LAS++ SL S +PD   E
Sbjct: 1   MAPHEIRRPFKRRPISDQQKRRELSLIRQTQHRSDAQQRARNLASSLISLQSSSPDVDPE 60

Query: 60  IELDLVPEPENQPEPSHKELDVLEASKLKGSEARKWFSKQLMHPEWMIDIPDSLSPNWFV 119
           I  + VPE     E      DV +AS+L+G EARKWF+KQLM PEWMID+PD+LS +W+V
Sbjct: 61  ILSEAVPELVGT-ESESSSFDVRQASRLRGPEARKWFAKQLMLPEWMIDVPDNLSQDWYV 119

Query: 120 FARPSGKRCFVVSCNGTTISRLRNGSVLHRFPSALPSGARKKD-SGSSQSYSILDCIFHE 178
            ARP+GKRCFVVS +GTT+SR+RNGS LH FPSALP GARKK  SG + SYSILDCIFHE
Sbjct: 120 LARPAGKRCFVVSSDGTTVSRVRNGSTLHLFPSALPGGARKKGASGPANSYSILDCIFHE 179

Query: 179 LDQTYYVIDMVCWRDYSLYDCTAEFRFFWLNSKVAESGACDPPSHYHKYRFSLVPVYSCD 238
            DQTYYVIDMVCWR YSLY+CT+EFRFFWL SK+AE+GACDPPS YHK+RFS+VP Y+CD
Sbjct: 180 SDQTYYVIDMVCWRGYSLYECTSEFRFFWLQSKLAETGACDPPSVYHKFRFSVVPFYNCD 239

Query: 239 RDGLYAAYTAPVPYVKDGLLFYNKHAHYQAGITPLVLVWKDENCSQYVMDTDSKGQVPNQ 298
           + GL++AYT  +PYV+DGLLFYNKHAHY  G TPLVL+WKDE+CSQYV+DTD+ G+VPNQ
Sbjct: 240 QSGLHSAYTGSLPYVRDGLLFYNKHAHYHTGNTPLVLIWKDESCSQYVIDTDNNGEVPNQ 299

Query: 299 QQVVLELQEDGKLTTSDDPPVVFGCLDGSFTQQSELLSGCLLRFAIGEAGLVLVDGKLEK 358
           Q +VLELQE+GKL TSDDPPV F CL+  F +QS L SG L+RFAIG+ GL  VDG+ EK
Sbjct: 300 QHIVLELQEEGKLVTSDDPPVPFSCLNADFVKQSGLSSGSLIRFAIGDGGLKCVDGRFEK 359

Query: 359 ADLNYLGKVNRARASADSFSKVMFQYSVRHSPLRIDDLLGSVSSPVDEESKPCDIEM 415
           ADL Y+G  NRARA ADS+SK+MFQY  RHSPL+++DL  ++ SP D++ KP ++EM
Sbjct: 360 ADLQYIGVSNRARAFADSYSKIMFQYMARHSPLKVEDLASTI-SPEDQQDKPPEVEM 415