Miyakogusa Predicted Gene

Lj0g3v0105109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0105109.1 tr|K1VW22|K1VW22_SPIPL 50S ribosomal protein L10
OS=Arthrospira platensis C1 PE=4
SV=1,34.22,1e-18,Ribosomal_L10,Ribosomal protein L10; SUBFAMILY NOT
NAMED,Ribosomal protein L10; FAMILY NOT NAMED,NUL,CUFF.5990.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13510.1 | Symbols:  | Ribosomal protein L10 family protein |...   285   1e-77
AT3G12370.1 | Symbols:  | Ribosomal protein L10 family protein |...   192   2e-49

>AT5G13510.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr5:4341294-4341956 FORWARD LENGTH=220
          Length = 220

 Score =  285 bits (730), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 162/199 (81%)

Query: 27  INPFNPGPTFKPLRHRFSSITAAIPRTKKEETVDSVRKQLENCYLLAGINYKGFTVKQFQ 86
           I+   P  +  P   R   I +A+ R KKEETV++V+  LENC+LLA INYKG TVKQFQ
Sbjct: 20  ISTLTPKTSNSPNYPRLPVIRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQ 79

Query: 87  ELRKTLPETTTLIVAKNTLVYKAVEGTEWETLKPCMKGMNVWLFVHTEEIPKAIKPYRDF 146
           +LR+TLP+TT LIVAKNTLV+KA+EGT+WE LKPCMKGMN WLFV T+EIP AIKPYR F
Sbjct: 80  DLRRTLPDTTKLIVAKNTLVFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSF 139

Query: 147 QKEKKLDENDFTGAVFEGKFYGPNEFKKLETLPTRAEIYANLLGSLKSPASALVSTLQAP 206
           QKE+KL+ NDF GAVFEGKFY P+ FK LET+PTRAE+YA +LG+L+SPA  LV+TLQAP
Sbjct: 140 QKERKLENNDFAGAVFEGKFYAPDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQAP 199

Query: 207 ARELVMTLKAHVKNLEEQA 225
           ARE++M L A++K LE+++
Sbjct: 200 AREVIMVLMAYIKKLEDES 218


>AT3G12370.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr3:3937464-3937979 REVERSE LENGTH=171
          Length = 171

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 111/144 (77%), Gaps = 2/144 (1%)

Query: 65  QLENCYLLAGINYKGFTVKQFQELRKTLPETTT--LIVAKNTLVYKAVEGTEWETLKPCM 122
            LENC+ + GINY G +VKQ QELR  L E T   L+VAKNTLVYKA+EGT+WE+LKPCM
Sbjct: 17  NLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKPCM 76

Query: 123 KGMNVWLFVHTEEIPKAIKPYRDFQKEKKLDENDFTGAVFEGKFYGPNEFKKLETLPTRA 182
           KGMN WLFV +E+IP A+K + +FQKEKKL +N+  GAVFE K Y P ++K +ET+P+RA
Sbjct: 77  KGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPSRA 136

Query: 183 EIYANLLGSLKSPASALVSTLQAP 206
           ++Y  +LGSL  PA  LV+ LQAP
Sbjct: 137 DVYGMMLGSLHWPALDLVNALQAP 160