Miyakogusa Predicted Gene

Lj0g3v0104809.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104809.1 tr|D5LAY5|D5LAY5_CHLRE 97782m OS=Chlamydomonas
reinhardtii GN=97782m PE=4 SV=1,31.38,4e-19,UNCHARACTERIZED,GINS
complex, subunit Psf3; Sld5,GINS complex,CUFF.5957.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55490.1 | Symbols:  | GINS complex protein | chr3:20572171-2...   285   2e-77
AT1G19080.2 | Symbols: TTN10 | GINS complex protein | chr1:65850...   285   2e-77
AT1G19080.1 | Symbols: TTN10, PSF3 | GINS complex protein | chr1...   285   2e-77

>AT3G55490.1 | Symbols:  | GINS complex protein |
           chr3:20572171-20573415 REVERSE LENGTH=185
          Length = 185

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 155/184 (84%)

Query: 1   MAKYYDIDDIMVEEEIVSVIFQKSASGVGIDPSSETDLIEAGSKVELPFWLAHELQLRQA 60
           MAKY+DIDDI++EEE V V+F K+A+GV IDPS+ET+  E GSKVELPFWLAHEL LRQA
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  VSVNVPPCFNQKTRLEIQADSASVDLKSRCPFFYEFGCKIAPIVGDRTIGFLLLSAFKSR 120
           V++N+PPCF+QKTRLE+QAD+A VDL+SRCP+FYEFGCKI P+V DRT+G LL +AFK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAAFATGSKFWTILTKEEINLYEVAQSAMASFKKWRMGGPRFQISNVLGRK 180
           YKE LTK +TAA  T SK+ + LTKEE NLYE A  +M +FKKWR GGPRFQ +++LGRK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKST 184
           RK +
Sbjct: 181 RKDS 184


>AT1G19080.2 | Symbols: TTN10 | GINS complex protein |
           chr1:6585087-6586308 FORWARD LENGTH=185
          Length = 185

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 155/184 (84%)

Query: 1   MAKYYDIDDIMVEEEIVSVIFQKSASGVGIDPSSETDLIEAGSKVELPFWLAHELQLRQA 60
           MAKY+DIDDI++EEE V V+F K+A+GV IDPS+ET+  E GSKVELPFWLAHEL LRQA
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  VSVNVPPCFNQKTRLEIQADSASVDLKSRCPFFYEFGCKIAPIVGDRTIGFLLLSAFKSR 120
           V++N+PPCF+QKTRLE+QAD+A VDL+SRCP+FYEFGCKI P+V DRT+G LL +AFK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAAFATGSKFWTILTKEEINLYEVAQSAMASFKKWRMGGPRFQISNVLGRK 180
           YKE LTK +TAA  T SK+ + LTKEE NLYE A  +M +FKKWR GGPRFQ +++LGRK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKST 184
           RK +
Sbjct: 181 RKDS 184


>AT1G19080.1 | Symbols: TTN10, PSF3 | GINS complex protein |
           chr1:6585087-6586308 FORWARD LENGTH=185
          Length = 185

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 155/184 (84%)

Query: 1   MAKYYDIDDIMVEEEIVSVIFQKSASGVGIDPSSETDLIEAGSKVELPFWLAHELQLRQA 60
           MAKY+DIDDI++EEE V V+F K+A+GV IDPS+ET+  E GSKVELPFWLAHEL LRQA
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  VSVNVPPCFNQKTRLEIQADSASVDLKSRCPFFYEFGCKIAPIVGDRTIGFLLLSAFKSR 120
           V++N+PPCF+QKTRLE+QAD+A VDL+SRCP+FYEFGCKI P+V DRT+G LL +AFK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAAFATGSKFWTILTKEEINLYEVAQSAMASFKKWRMGGPRFQISNVLGRK 180
           YKE LTK +TAA  T SK+ + LTKEE NLYE A  +M +FKKWR GGPRFQ +++LGRK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKST 184
           RK +
Sbjct: 181 RKDS 184