Miyakogusa Predicted Gene

Lj0g3v0104719.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104719.2 Non Chatacterized Hit- tr|Q6ZI97|Q6ZI97_ORYSJ
Putative uncharacterized protein OJ1770_H02.35
OS=Oryz,47.9,4e-17,seg,NULL,CUFF.5948.2
         (128 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27110.2 | Symbols: FRS3 | FAR1-related sequence 3 | chr2:115...    56   6e-09
AT2G27110.1 | Symbols: FRS3 | FAR1-related sequence 3 | chr2:115...    56   6e-09
AT2G27110.3 | Symbols: FRS3 | FAR1-related sequence 3 | chr2:115...    56   7e-09

>AT2G27110.2 | Symbols: FRS3 | FAR1-related sequence 3 |
           chr2:11576969-11580405 REVERSE LENGTH=851
          Length = 851

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 44/67 (65%)

Query: 54  VPRLKAMTWNMTNQDKESTDPAAAINLKLQSDARFHTGELDVKFQLATDSLEMMLKAMYN 113
           +P LK++TW M +++       A INLKL    +F + ++DVKFQL++ +LE ML++M  
Sbjct: 721 LPCLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAY 780

Query: 114 VRDQFST 120
           + +Q S+
Sbjct: 781 ISEQLSS 787



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 48  LKDQNIVPRLKAMTWNMTNQDKESTDPAAAINLKLQSDARFHTGELDVKFQLATDSLEMM 107
           L    + P L++M + ++ Q     +  A INLKLQ D    TGE +VKFQ++ D+L  M
Sbjct: 766 LSSVTLEPMLRSMAY-ISEQLSSPANRVAVINLKLQ-DTETTTGESEVKFQVSRDTLGAM 823

Query: 108 LKAMYNVRDQFSTMDEV 124
           L++M  +R+Q S + E+
Sbjct: 824 LRSMAYIREQLSIVGEL 840


>AT2G27110.1 | Symbols: FRS3 | FAR1-related sequence 3 |
           chr2:11576969-11580405 REVERSE LENGTH=851
          Length = 851

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 44/67 (65%)

Query: 54  VPRLKAMTWNMTNQDKESTDPAAAINLKLQSDARFHTGELDVKFQLATDSLEMMLKAMYN 113
           +P LK++TW M +++       A INLKL    +F + ++DVKFQL++ +LE ML++M  
Sbjct: 721 LPCLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAY 780

Query: 114 VRDQFST 120
           + +Q S+
Sbjct: 781 ISEQLSS 787



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 48  LKDQNIVPRLKAMTWNMTNQDKESTDPAAAINLKLQSDARFHTGELDVKFQLATDSLEMM 107
           L    + P L++M + ++ Q     +  A INLKLQ D    TGE +VKFQ++ D+L  M
Sbjct: 766 LSSVTLEPMLRSMAY-ISEQLSSPANRVAVINLKLQ-DTETTTGESEVKFQVSRDTLGAM 823

Query: 108 LKAMYNVRDQFSTMDEV 124
           L++M  +R+Q S + E+
Sbjct: 824 LRSMAYIREQLSIVGEL 840


>AT2G27110.3 | Symbols: FRS3 | FAR1-related sequence 3 |
           chr2:11576969-11580259 REVERSE LENGTH=706
          Length = 706

 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 44/67 (65%)

Query: 54  VPRLKAMTWNMTNQDKESTDPAAAINLKLQSDARFHTGELDVKFQLATDSLEMMLKAMYN 113
           +P LK++TW M +++       A INLKL    +F + ++DVKFQL++ +LE ML++M  
Sbjct: 576 LPCLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAY 635

Query: 114 VRDQFST 120
           + +Q S+
Sbjct: 636 ISEQLSS 642



 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 48  LKDQNIVPRLKAMTWNMTNQDKESTDPAAAINLKLQSDARFHTGELDVKFQLATDSLEMM 107
           L    + P L++M + ++ Q     +  A INLKLQ D    TGE +VKFQ++ D+L  M
Sbjct: 621 LSSVTLEPMLRSMAY-ISEQLSSPANRVAVINLKLQ-DTETTTGESEVKFQVSRDTLGAM 678

Query: 108 LKAMYNVRDQFSTMDEV 124
           L++M  +R+Q S + E+
Sbjct: 679 LRSMAYIREQLSIVGEL 695