Miyakogusa Predicted Gene

Lj0g3v0104559.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104559.1 tr|Q5I6E1|Q5I6E1_VOLCA Arsenite-resistance
protein OS=Volvox carteri f. nagariensis PE=2
SV=1,22.91,3e-17,DUF3546,Protein of unknown function DUF3546;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; coiled-coil,NULL;,CUFF.6127.1
         (388 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27100.1 | Symbols: SE | C2H2 zinc-finger protein SERRATE (SE...   491   e-139

>AT2G27100.1 | Symbols: SE | C2H2 zinc-finger protein SERRATE (SE) |
           chr2:11572587-11576357 FORWARD LENGTH=720
          Length = 720

 Score =  491 bits (1265), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/384 (65%), Positives = 291/384 (75%), Gaps = 8/384 (2%)

Query: 4   GYSDLP-SGGAQREGLMSYKQFIQELEDDVLPAEAERRYQEYKSEYISTQKRAYFNAHKD 62
           GY D   SG  QR+GLMSYKQFIQELEDD+LP+EAERRYQEYKSEYI+TQKRA+FN HK+
Sbjct: 180 GYGDASNSGNPQRDGLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKE 239

Query: 63  EEWLKDKYHPTNLLTVIERRNENARRVAKDFLLDLQSGTLDLNPGLNSSPPNKSGQASEG 122
           E+WLK+KYHPTNLL+VIERRN+ A++VAKDFLLDLQSGTLDL P + +   NKSG+ SE 
Sbjct: 240 EDWLKNKYHPTNLLSVIERRNDLAQKVAKDFLLDLQSGTLDLGPAVTAL--NKSGRTSEP 297

Query: 123 NSEEETDASGKRRRHGRGSNNDND-FSAAPKAHPISSEXXXXXXXXXXXXXVVRKLDIEK 181
           NSE+E    GKR+RHG G   +N+  SAAPKA   +S+             +VRKLD EK
Sbjct: 298 NSEDEAAGVGKRKRHGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEK 357

Query: 182 GIEDNILYTSDQSKND-DKAHSGSGGPIVIIRGLASVKGLEGVELLDTLITYLWRIHGID 240
            IE+N+L  S+  K+  +K HSGS GP+VIIRGL SVKGLEGVELLDTL+TYLWR+HG+D
Sbjct: 358 KIEENVLQGSETEKSGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLD 417

Query: 241 YYGMVETNEAKGFRHVRPDGTGHEEASKSGPEWEKKLDSFWQGRLNGQDPLDVMTAKEKI 300
           YYG VETNEAKG RHVR +G   + +   G E E K DS WQ RL GQDPL+VM AKEKI
Sbjct: 418 YYGKVETNEAKGLRHVRAEG---KVSDAKGDENESKFDSHWQERLKGQDPLEVMAAKEKI 474

Query: 301 DAAATDFLDPHVRKIRDEKYGWKYGCGAKGCTKLFHASESVXXXXXXXXXXXXXXXTAKL 360
           DAAAT+ LDPHVRKIRDEKYGWKYGCGAKGCTKLFHA+E V               T K+
Sbjct: 475 DAAATEALDPHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKV 534

Query: 361 REDLYFQNYMNDSNAPGGTPIMQQ 384
           RE+LYFQNYMND NAPGG P  QQ
Sbjct: 535 REELYFQNYMNDPNAPGGQPATQQ 558