Miyakogusa Predicted Gene

Lj0g3v0104419.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104419.1 Non Chatacterized Hit- tr|G4YGY4|G4YGY4_PHYSP
Putative uncharacterized protein OS=Phytophthora
sojae,49.02,1e-18,DNA/RNA polymerases,NULL; Ribonuclease
H-like,Ribonuclease H-like domain; DNAPOLI,DNA polymerase A;
,CUFF.5933.1
         (428 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...   541   e-154
AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:188...   541   e-154
AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...   540   e-154

>AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 |
           chr3:7168261-7173357 FORWARD LENGTH=1034
          Length = 1034

 Score =  541 bits (1393), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/467 (61%), Positives = 324/467 (69%), Gaps = 62/467 (13%)

Query: 23  SMDQVWHNYSFDCHVIQNYGFKVSGFHADTMHMARLWDSSRRWVGGYSLEALTSNKVVMS 82
           S+ +VWHNYSFD H+I+NYG K+SGFH DTMHMARLWDSSRR  GGYSLEALTS+  V+ 
Sbjct: 335 SIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLG 394

Query: 83  RAKLNCEKDLIGKVSMTNIFGLKKFKKDGSEGKMTTIAPVEVLQREDRIPW--------- 133
             +   E +L GK+SM  IFG  K KKDGSEGK+  I PV+ LQ EDR  W         
Sbjct: 395 GTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALDSI 454

Query: 134 ---------------------------------------PFGELLVKMESEGMLVDQSYL 154
                                                  PFGELL KMESEGMLVD+ YL
Sbjct: 455 STLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRDYL 514

Query: 155 QNIEKVAKAEQLVAVNRFKKWASKYCPDAKYMNVGSDAQLRVLLFGGTVNSKNHDEAIPT 214
             IE VAKAEQ +AV+RF+ WASK+CPDAK+MNVGSD QLR L FGG  NS N DE +P 
Sbjct: 515 AQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCN-DEDLPY 573

Query: 215 ERIFRIPNVDKVIEEGKKAPTKFRDLKLHSIGCN-LRTEMYTASGWPSVSGDALKALAGK 273
           E++F++PNVDKVIEEGKK  TKFR++KLH I    L TE +TASGWPSVSGD LKALAGK
Sbjct: 574 EKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALAGK 633

Query: 274 VSAEYDFNEAC-------NFDLDDEDGNP-----SQFEVEPVEIDQSAYGTAFAAFPTEE 321
           VSAEYD+ E         N   DD    P     +Q     VE D SAYGTAF AF   E
Sbjct: 634 VSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGGGE 693

Query: 322 EGREACHALAALRDVCSIDSLISNFILPLQGHNISGKDNRVHTSLNPNTETGRVSASRPS 381
            G+EACHA+AAL +VCSIDSLISNFILPLQG N+SGKD RVH SLN NTETGR+SA RP+
Sbjct: 694 SGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARRPN 753

Query: 382 LQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLADCKS 428
           LQNQPALEKDRYKIRQAFIA+PGNSLIVADYGQLELRILAHLA C+S
Sbjct: 754 LQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCES 800


>AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 |
           chr1:18839277-18844313 FORWARD LENGTH=1050
          Length = 1050

 Score =  541 bits (1393), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/459 (59%), Positives = 326/459 (71%), Gaps = 58/459 (12%)

Query: 26  QVWHNYSFDCHVIQNYGFKVSGFHADTMHMARLWDSSRRWVGGYSLEALTSNKVVMSRAK 85
           +VWHNYSFD H+I+N+G ++SGFHADTMHMARLWDS+RR  GGYSLEALTS+  V+   +
Sbjct: 360 KVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQ 419

Query: 86  LNCEKDLIGKVSMTNIFGLKKFKKDGSEGKMTTIAPVEVLQREDRIPW------------ 133
              E + +GK+SM  IFG +K KKDGSEGK+  I PVE LQREDR  W            
Sbjct: 420 TKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDREAWISYSALDAISTL 479

Query: 134 ------------------------------------PFGELLVKMESEGMLVDQSYLQNI 157
                                               PFGELLVKME+EG+LVD+ YL  I
Sbjct: 480 KLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKMEAEGILVDREYLAEI 539

Query: 158 EKVAKAEQLVAVNRFKKWASKYCPDAKYMNVGSDAQLRVLLFGGTVNSKNHDEAIPTERI 217
           EKVAKAEQ VA +RF+ WASKYCPDAKYMN+GSD QLR L FGG  NS  HDE +P E++
Sbjct: 540 EKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGISNS--HDEVLPVEKL 597

Query: 218 FRIPNVDKVIEEGKKAPTKFRDLKLHSIGCN-LRTEMYTASGWPSVSGDALKALAGKVSA 276
           F++PN+DKVIEEGKK PTKFR++KLH I  + L TE +TASGWPSV GD LK LAGKVSA
Sbjct: 598 FKVPNIDKVIEEGKKTPTKFRNIKLHRISDSPLSTENFTASGWPSVGGDVLKELAGKVSA 657

Query: 277 EYDF-NEACNFDLDDEDG------NPSQFEVEPVEIDQSAYGTAFAAFPTEEEGREACHA 329
           EYDF ++  +  L++         + +Q      E D SAYGTA+ AF   E G+EACHA
Sbjct: 658 EYDFMDDVSDISLEEVVEDDDVETSETQKSKTDDETDTSAYGTAYVAFGGGERGKEACHA 717

Query: 330 LAALRDVCSIDSLISNFILPLQGHNISGKDNRVHTSLNPNTETGRVSASRPSLQNQPALE 389
           +A+L +VCSIDSLISNFILPLQG N+SGKD RVH SLN NTETGR+SA RP+LQNQPALE
Sbjct: 718 IASLCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARRPNLQNQPALE 777

Query: 390 KDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLADCKS 428
           KDRYKIR+AF+A+PGN+L+VADYGQLELRILAHL  CKS
Sbjct: 778 KDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKS 816


>AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 |
           chr3:7168261-7173357 FORWARD LENGTH=1049
          Length = 1049

 Score =  540 bits (1392), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/467 (61%), Positives = 324/467 (69%), Gaps = 62/467 (13%)

Query: 23  SMDQVWHNYSFDCHVIQNYGFKVSGFHADTMHMARLWDSSRRWVGGYSLEALTSNKVVMS 82
           S+ +VWHNYSFD H+I+NYG K+SGFH DTMHMARLWDSSRR  GGYSLEALTS+  V+ 
Sbjct: 350 SIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYSLEALTSDPKVLG 409

Query: 83  RAKLNCEKDLIGKVSMTNIFGLKKFKKDGSEGKMTTIAPVEVLQREDRIPW--------- 133
             +   E +L GK+SM  IFG  K KKDGSEGK+  I PV+ LQ EDR  W         
Sbjct: 410 GTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDREAWISYSALDSI 469

Query: 134 ---------------------------------------PFGELLVKMESEGMLVDQSYL 154
                                                  PFGELL KMESEGMLVD+ YL
Sbjct: 470 STLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKMESEGMLVDRDYL 529

Query: 155 QNIEKVAKAEQLVAVNRFKKWASKYCPDAKYMNVGSDAQLRVLLFGGTVNSKNHDEAIPT 214
             IE VAKAEQ +AV+RF+ WASK+CPDAK+MNVGSD QLR L FGG  NS N DE +P 
Sbjct: 530 AQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGISNSCN-DEDLPY 588

Query: 215 ERIFRIPNVDKVIEEGKKAPTKFRDLKLHSIGCN-LRTEMYTASGWPSVSGDALKALAGK 273
           E++F++PNVDKVIEEGKK  TKFR++KLH I    L TE +TASGWPSVSGD LKALAGK
Sbjct: 589 EKLFKVPNVDKVIEEGKKRATKFRNIKLHRISDRPLPTEKFTASGWPSVSGDTLKALAGK 648

Query: 274 VSAEYDFNEAC-------NFDLDDEDGNP-----SQFEVEPVEIDQSAYGTAFAAFPTEE 321
           VSAEYD+ E         N   DD    P     +Q     VE D SAYGTAF AF   E
Sbjct: 649 VSAEYDYMEGVLDTCLEENIGDDDCISLPDEVVETQHVNTSVESDTSAYGTAFDAFGGGE 708

Query: 322 EGREACHALAALRDVCSIDSLISNFILPLQGHNISGKDNRVHTSLNPNTETGRVSASRPS 381
            G+EACHA+AAL +VCSIDSLISNFILPLQG N+SGKD RVH SLN NTETGR+SA RP+
Sbjct: 709 SGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNINTETGRLSARRPN 768

Query: 382 LQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLADCKS 428
           LQNQPALEKDRYKIRQAFIA+PGNSLIVADYGQLELRILAHLA C+S
Sbjct: 769 LQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCES 815