Miyakogusa Predicted Gene

Lj0g3v0104349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104349.1 Non Chatacterized Hit- tr|G7PY20|G7PY20_MACFA
Putative uncharacterized protein OS=Macaca fasciculari,60,2e-19,WD40
repeat-like,WD40-repeat-containing domain; WD40,WD40 repeat; no
description,WD40/YVTN repeat-li,CUFF.5924.1
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19540.1 | Symbols:  | Transducin family protein / WD-40 repe...   114   1e-26
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin fam...    49   5e-07
AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein / ...    48   1e-06

>AT2G19540.1 | Symbols:  | Transducin family protein / WD-40 repeat
           family protein | chr2:8461804-8464347 FORWARD LENGTH=469
          Length = 469

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 4/103 (3%)

Query: 1   MSSHLNSLXXXXXXXXXXXX-XXXQVPLQKFK-HKDEGYAIDWSPVVPGRLVSGDCNNCI 58
           MSSHLN+L                Q PL  F  HKDEGYAIDWSP   GRL+SGDC + I
Sbjct: 189 MSSHLNALAESETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMI 248

Query: 59  YLWEPNSAAATWSVDNAPFIGHTASVEDLQWSPKDHDIFASCS 101
           +LWEP  A+ +W+VD  PF GHTASVEDLQWSP + ++FASCS
Sbjct: 249 HLWEP--ASGSWAVDPIPFAGHTASVEDLQWSPAEENVFASCS 289


>AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family
           protein / WD-40 repeat family protein |
           chr2:7281615-7283583 REVERSE LENGTH=415
          Length = 415

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 27  LQKFKHKDEGYAIDWSPVVPGRLVSGDCNNCIYLWEPNSAAATWSVDNAPFI--GHTASV 84
           L+   H  EGY + WSP   G L+SG  +  I LW+  SA     V NA F+  GH +++
Sbjct: 162 LRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDV-SATPQDKVLNAMFVYEGHESAI 220

Query: 85  EDLQWSPKDHDIFASC 100
            D+ W  K+ ++F S 
Sbjct: 221 ADVSWHMKNENLFGSA 236


>AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein /
           WD-40 repeat family protein | chr4:16682752-16684751
           REVERSE LENGTH=424
          Length = 424

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 27  LQKFKHKDEGYAIDWSPVVPGRLVSGDCNNCIYLWEPNSAAATWSVDNAPFI--GHTASV 84
           L+   H+ EGY + WS    G L+SG  +  I LW+  SA AT  V N   +  GH + +
Sbjct: 163 LRLMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDV-SATATDKVLNPMHVYEGHQSII 221

Query: 85  EDLQWSPKDHDIFASC 100
           ED+ W  K+ +IF S 
Sbjct: 222 EDVAWHMKNENIFGSA 237