Miyakogusa Predicted Gene

Lj0g3v0104259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104259.1 tr|I3SCY1|I3SCY1_LOTJA DNA primase OS=Lotus
japonicus PE=2 SV=1,98.75,0,DNA_primase_S,DNA primase, small subunit;
DNA PRIMASE SMALL SUBUNIT,DNA primase, small subunit, euka,CUFF.5920.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases ...   248   2e-66

>AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases |
           chr5:16761071-16764074 FORWARD LENGTH=451
          Length = 451

 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 130/152 (85%)

Query: 9   ELDFNPNYLKLYYGKLFPFTDIFRWMSYGNDGKHPGCDSSYFGRREFSFTLENDIYLRFQ 68
           E DFN +YL++YYG LFP+TDI +W+SYG+DGKHPGCD  YFGRREFSFTLEND+YLR++
Sbjct: 23  ENDFNVHYLRIYYGNLFPYTDIHKWLSYGHDGKHPGCDEYYFGRREFSFTLENDVYLRYK 82

Query: 69  SFNNALELENSIKEKSPFKIDIGPVYTVDPAKRHAYAQGDNKVFAPVERELIFDIDMSDY 128
           SF NA  +E +IK   P+KIDIG VY+VDP KRHAYAQ    +F PVEREL+FDID++DY
Sbjct: 83  SFKNASLMEAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGTNLFTPVERELVFDIDITDY 142

Query: 129 DDVRYCCSGADVCLNCWPLMTIAIKVIDTALR 160
           DDVRYCCSGADVC  CWPLMT+AIKVIDT+LR
Sbjct: 143 DDVRYCCSGADVCSKCWPLMTVAIKVIDTSLR 174