Miyakogusa Predicted Gene

Lj0g3v0104159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104159.1 Non Chatacterized Hit- tr|I1MG10|I1MG10_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10927
PE,83.85,0,seg,NULL; SEY-1,NULL; GUANYLATE BINDING PROTEIN,NULL;
RHD3,Root hair defective 3 GTP-binding,CUFF.5911.1
         (385 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45160.1 | Symbols:  | Root hair defective 3 GTP-binding prot...   480   e-136
AT3G13870.2 | Symbols: RHD3 | Root hair defective 3 GTP-binding ...   414   e-116
AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding ...   414   e-116
AT1G72960.1 | Symbols:  | Root hair defective 3 GTP-binding prot...   412   e-115

>AT5G45160.1 | Symbols:  | Root hair defective 3 GTP-binding protein
           (RHD3) | chr5:18264991-18270035 FORWARD LENGTH=834
          Length = 834

 Score =  480 bits (1235), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/376 (62%), Positives = 283/376 (75%), Gaps = 3/376 (0%)

Query: 1   MLEFDKGSADAAIRQANWGASKVRDKLRRDIDSHASSVRSAKLSEIMTSFETQLVKALAE 60
           ++ FDKG  DAA++QA W ASK+R+KL RDID+H    RSAKLSE+  ++E +L +AL+E
Sbjct: 411 LMVFDKGCEDAAVKQATWDASKIREKLCRDIDAHTFFARSAKLSELTANYEKRLTQALSE 470

Query: 61  PVESLFEAGGKDTWLSIRKLLKRETEAVVSKFLTSIAGFELDEETIERMQQTLRDHGRKV 120
           PVESLFEAGGK+TW SIRKLLKRETE  V+ FL  + GFELD   I+ M Q L+++ + +
Sbjct: 471 PVESLFEAGGKETWPSIRKLLKRETETAVTDFLDVVTGFELDHAKIDAMVQNLKNYSQSL 530

Query: 121 VENKAREEAGKILIRMKDRFSTVFNHDSDSLPRVWTGKEDIRAITXXXXXXXXXXXXXXX 180
           VE KAREEA KILIRMKDRFSTVF+HD DS+PRVWTGKEDIRAIT               
Sbjct: 531 VEKKAREEAAKILIRMKDRFSTVFSHDKDSMPRVWTGKEDIRAITKDARAEALSLLSVMT 590

Query: 181 XIRLDEKPDRIESVLHSSLIDNKTVTASSSQYTSREASVDPLASSTWEEVSPGGVLITPV 240
            IRLDE+PD IES L SSL+D  TV+A+SS   S   S DPLASS+WEEV P  +L+TPV
Sbjct: 591 AIRLDERPDNIESTLFSSLMDG-TVSAASSHNRSVGTSTDPLASSSWEEVPPNNILLTPV 649

Query: 241 QCKSLWRQFQGETEYTVTQAISAQEAYKRSNNWLPPPWAIMAMVVLGFNEFMLLLKNPXX 300
           QCKSLWRQF+ ETEYTVTQAISAQEA+KR+NNWLPP WAI+ M+VLGFNEFM+LLKNP  
Sbjct: 650 QCKSLWRQFKSETEYTVTQAISAQEAHKRNNNWLPPAWAIVLMIVLGFNEFMMLLKNPLY 709

Query: 301 XXXXXXXXXXXKAVWIQMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPAP 360
                      KA+W+Q+DI  EF+HGA+ G+LSI+SKFLPTVMNLL++LAEEAQG    
Sbjct: 710 LLGFFVAFLLSKALWVQLDIPREFQHGAVAGVLSITSKFLPTVMNLLRKLAEEAQGKTTQ 769

Query: 361 QGTQPQSSATQIYRNQ 376
           +   P  SA+Q YR Q
Sbjct: 770 E--VPDLSASQTYRQQ 783


>AT3G13870.2 | Symbols: RHD3 | Root hair defective 3 GTP-binding
           protein (RHD3) | chr3:4565762-4570261 REVERSE LENGTH=738
          Length = 738

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/367 (54%), Positives = 262/367 (71%), Gaps = 4/367 (1%)

Query: 3   EFDKGSADAAIRQANWGASKVRDKLRRDIDSHASSVRSAKLSEIMTSFETQLVKALAEPV 62
           +FDKG  +A I QA W  SK R+KL RDI++H SSVR+AKL+E+ T +E++L  AL+ PV
Sbjct: 346 KFDKGCEEAVIEQAKWDTSKTREKLERDIEAHISSVRTAKLAELTTLYESKLNVALSGPV 405

Query: 63  ESLFEAGGKDTWLSIRKLLKRETEAVVSKFLTSIAGFELDEETIERMQQTLRDHGRKVVE 122
           E+L +    +TW +IRKLL+RE E  V     +++GFE+DEET  +M   L ++ R +VE
Sbjct: 406 EALLDGANDETWPAIRKLLRREGELAVYGLSNALSGFEMDEETRSKMLADLENYARGIVE 465

Query: 123 NKAREEAGKILIRMKDRFSTVFNHDSDSLPRVWTGKEDIRAITXXXXXXXXXXXXXXXXI 182
            KA+EEAG+ ++RMKDRF+T+F+HDSDS+PRVWTGKEDIRAIT                I
Sbjct: 466 TKAKEEAGRAMMRMKDRFATIFSHDSDSMPRVWTGKEDIRAITKMARSASLKLLSVMAVI 525

Query: 183 RLDEKPDRIESVLHSSLIDNKTVTASSSQYTSREASVDPLASSTWEEVSPGGVLITPVQC 242
           RLD++ D IE  L  +L ++    A+S   ++    +D LASSTWE+V+P   LITPVQC
Sbjct: 526 RLDDELDNIEKTLTLALFNSTGNNATSKSIST----IDSLASSTWEKVAPEKTLITPVQC 581

Query: 243 KSLWRQFQGETEYTVTQAISAQEAYKRSNNWLPPPWAIMAMVVLGFNEFMLLLKNPXXXX 302
           KSLWRQF+ ETEYTVTQAISAQEA +R+NNWLPPPWAI+A+VVLGFNEFM LL+NP    
Sbjct: 582 KSLWRQFKNETEYTVTQAISAQEANRRNNNWLPPPWAILALVVLGFNEFMTLLRNPLWLL 641

Query: 303 XXXXXXXXXKAVWIQMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPAPQG 362
                    KA+W+Q++I+GEF++G LPGLLS+S+KF+PTVMNLLK+LAEE Q  P    
Sbjct: 642 VLFVGYLVSKALWVQLNISGEFQNGVLPGLLSLSTKFIPTVMNLLKKLAEEGQAPPTNSN 701

Query: 363 TQPQSSA 369
               S+A
Sbjct: 702 QSMNSTA 708


>AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding
           protein (RHD3) | chr3:4565762-4571109 REVERSE LENGTH=802
          Length = 802

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/367 (54%), Positives = 262/367 (71%), Gaps = 4/367 (1%)

Query: 3   EFDKGSADAAIRQANWGASKVRDKLRRDIDSHASSVRSAKLSEIMTSFETQLVKALAEPV 62
           +FDKG  +A I QA W  SK R+KL RDI++H SSVR+AKL+E+ T +E++L  AL+ PV
Sbjct: 410 KFDKGCEEAVIEQAKWDTSKTREKLERDIEAHISSVRTAKLAELTTLYESKLNVALSGPV 469

Query: 63  ESLFEAGGKDTWLSIRKLLKRETEAVVSKFLTSIAGFELDEETIERMQQTLRDHGRKVVE 122
           E+L +    +TW +IRKLL+RE E  V     +++GFE+DEET  +M   L ++ R +VE
Sbjct: 470 EALLDGANDETWPAIRKLLRREGELAVYGLSNALSGFEMDEETRSKMLADLENYARGIVE 529

Query: 123 NKAREEAGKILIRMKDRFSTVFNHDSDSLPRVWTGKEDIRAITXXXXXXXXXXXXXXXXI 182
            KA+EEAG+ ++RMKDRF+T+F+HDSDS+PRVWTGKEDIRAIT                I
Sbjct: 530 TKAKEEAGRAMMRMKDRFATIFSHDSDSMPRVWTGKEDIRAITKMARSASLKLLSVMAVI 589

Query: 183 RLDEKPDRIESVLHSSLIDNKTVTASSSQYTSREASVDPLASSTWEEVSPGGVLITPVQC 242
           RLD++ D IE  L  +L ++    A+S   ++    +D LASSTWE+V+P   LITPVQC
Sbjct: 590 RLDDELDNIEKTLTLALFNSTGNNATSKSIST----IDSLASSTWEKVAPEKTLITPVQC 645

Query: 243 KSLWRQFQGETEYTVTQAISAQEAYKRSNNWLPPPWAIMAMVVLGFNEFMLLLKNPXXXX 302
           KSLWRQF+ ETEYTVTQAISAQEA +R+NNWLPPPWAI+A+VVLGFNEFM LL+NP    
Sbjct: 646 KSLWRQFKNETEYTVTQAISAQEANRRNNNWLPPPWAILALVVLGFNEFMTLLRNPLWLL 705

Query: 303 XXXXXXXXXKAVWIQMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPAPQG 362
                    KA+W+Q++I+GEF++G LPGLLS+S+KF+PTVMNLLK+LAEE Q  P    
Sbjct: 706 VLFVGYLVSKALWVQLNISGEFQNGVLPGLLSLSTKFIPTVMNLLKKLAEEGQAPPTNSN 765

Query: 363 TQPQSSA 369
               S+A
Sbjct: 766 QSMNSTA 772


>AT1G72960.1 | Symbols:  | Root hair defective 3 GTP-binding protein
           (RHD3) | chr1:27446263-27450862 FORWARD LENGTH=795
          Length = 795

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/386 (53%), Positives = 272/386 (70%), Gaps = 8/386 (2%)

Query: 1   MLEFDKGSADAAIRQANWGASKVRDKLRRDIDSHASSVRSAKLSEIMTSFETQLVKALAE 60
           M +FD+  A A I QANW  SKVRDKL RDI++H SSVR++KLSE+ + +E+++ +AL+E
Sbjct: 413 MTQFDEECAGAIIEQANWDTSKVRDKLVRDIEAHISSVRTSKLSELTSLYESKVHEALSE 472

Query: 61  PVESLFEAGGKDTWLSIRKLLKRETEAVVSKFLTSIAGFELDEETIERMQQTLRDHGRKV 120
           PVE+L +    +TW +++KL +RETE+ VS   +++AGF+++EET +RM ++L+D+ R V
Sbjct: 473 PVEALLDGANDETWSTVKKLHRRETESAVSGLSSALAGFDMEEETRDRMVKSLQDYARGV 532

Query: 121 VENKAREEAGKILIRMKDRFSTVFNHDSDSLPRVWTGKEDIRAITXXXXXXXXXXXXXXX 180
           +E KA+EEA ++L+RMK+RF T+F+HDSDS+PRVWTGKED+RAIT               
Sbjct: 533 IETKAKEEAVRVLMRMKERFGTIFSHDSDSMPRVWTGKEDLRAITKSARSASLKLLSVMA 592

Query: 181 XIRLDEKPDRIESVLHSSLID-NKTVTASSSQYTSREASVDPLASSTWEEVSPGGVLITP 239
            IRL ++PD IE  L  +L+D  K  T+  S  TS     DPLASSTW+EV     LITP
Sbjct: 593 VIRLGDEPDNIEKTLTVALLDPTKNDTSKKSITTS-----DPLASSTWDEVPSSRTLITP 647

Query: 240 VQCKSLWRQFQGETEYTVTQAISAQEAYKRSNNWLPPPWAIMAMVVLGFNEFMLLLKNPX 299
           VQCKS+WRQF+ ETEYTVTQAISAQEA +R NNWLPPPWAI+A++VLGFNEFM LL+NP 
Sbjct: 648 VQCKSIWRQFKTETEYTVTQAISAQEANRRGNNWLPPPWAILALIVLGFNEFMTLLRNPL 707

Query: 300 XXXXXXXXXXXXKAVWIQMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPA 359
                       KA+W Q+DI GEFR+GALPGL+SIS+KF+PTVMNL+K LA  AQG   
Sbjct: 708 YLGVMFVAFLLAKALWTQLDIPGEFRNGALPGLISISAKFVPTVMNLIKNLA--AQGEDP 765

Query: 360 PQGTQPQSSATQIYRNQVQKPDRVSS 385
           P        ++    +    PD  SS
Sbjct: 766 PAANPENRRSSNNTSSSENPPDHKSS 791