Miyakogusa Predicted Gene

Lj0g3v0103959.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103959.4 Non Chatacterized Hit- tr|B7FID7|B7FID7_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,87.56,0,seg,NULL; RNA-binding domain, RBD,NULL; RNA recognition
motif,RNA recognition motif domain; RRM_1,RN,CUFF.5917.4
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   209   8e-55
AT5G10350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   206   1e-53
AT5G10350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   191   2e-49
AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding pr...   169   1e-42
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |...   159   1e-39
AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |...   155   1e-38
AT5G10350.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   147   4e-36

>AT5G65260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:26080501-26082984 REVERSE LENGTH=220
          Length = 220

 Score =  209 bits (533), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 118/220 (53%), Positives = 128/220 (58%), Gaps = 7/220 (3%)

Query: 1   MDEEEHEVYGGEIPDVGXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXX 55
           M+EEEHEVYGGEIPDVG                                           
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 56  XXXQAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVN 115
              QAKVEKE+G  QDP     +QA KEE D RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 119

Query: 116 RVTILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPR 175
           RVTILTDKFGQPKGF              L+LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 120 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 179

Query: 176 RYDPYMAYGXXX-XXXXXXXXXXXXGKVPRFRRPARYMPY 214
           R++PYM Y                 GK PRFRRP RYMPY
Sbjct: 180 RFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219


>AT5G10350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255674-3257746 REVERSE LENGTH=217
          Length = 217

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 123/216 (56%), Gaps = 2/216 (0%)

Query: 1   MDEEEHEVYGGEIPDVGXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 59
           M+EEEHEVYGGEIP+VG                                          Q
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 60  AKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 119
           AKVEKE+G  QDP     +Q  KEE D RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 120 LTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRRYDP 179
           L DKFGQPKGF              L+LNESELHGRQLKV PKRTNVPGMKQY P R++P
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 180 YMAYGXXX-XXXXXXXXXXXXGKVPRFRRPARYMPY 214
            M Y                 GK PRFRRP RYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216


>AT5G10350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255808-3257746 REVERSE LENGTH=202
          Length = 202

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 110/184 (59%), Gaps = 1/184 (0%)

Query: 1   MDEEEHEVYGGEIPDVGXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 59
           M+EEEHEVYGGEIP+VG                                          Q
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 60  AKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 119
           AKVEKE+G  QDP     +Q  KEE D RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 120 LTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRRYDP 179
           L DKFGQPKGF              L+LNESELHGRQLKV PKRTNVPGMKQY P R++P
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 180 YMAY 183
            M Y
Sbjct: 181 SMGY 184


>AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding
           protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227
          Length = 227

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 105/171 (61%), Gaps = 33/171 (19%)

Query: 59  QAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 118
           QAK EK++G  QDP     S A KEE D RS++VGNVDYACTPEEVQQHFQSCGTVNRVT
Sbjct: 75  QAKAEKDMGASQDPSGGV-SAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVT 133

Query: 119 ILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRR-- 176
           ILTDKFGQPKGF              L LNESELHGRQ+KV  KRTNVPGM+Q+R R   
Sbjct: 134 ILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRP 193

Query: 177 -------------YDPYMAYGXXXXXXXXXXXXXXXGKVPRFRRPARYMPY 214
                        Y PY AY                G+VPRFRRP RY PY
Sbjct: 194 FRPMRGFMPGVPFYPPY-AY----------------GRVPRFRRPMRYRPY 227


>AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |
           chr5:20779760-20781241 FORWARD LENGTH=265
          Length = 265

 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 94/152 (61%), Gaps = 32/152 (21%)

Query: 78  SQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFXXXXXXX 137
           S A KEE D RS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF       
Sbjct: 131 SAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVE 190

Query: 138 XXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPR---------------RYDPYMA 182
                  L LNESELHGRQ+KV  KRTNVPGM+Q+R R                Y PY A
Sbjct: 191 VEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGFMPGVPFYPPY-A 249

Query: 183 YGXXXXXXXXXXXXXXXGKVPRFRRPARYMPY 214
           Y                G+VPRFRRP RY PY
Sbjct: 250 Y----------------GRVPRFRRPMRYRPY 265


>AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |
           chr5:20779346-20781241 FORWARD LENGTH=142
          Length = 142

 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 92/139 (66%), Gaps = 6/139 (4%)

Query: 78  SQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFXXXXXXX 137
           S A KEE D RS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF       
Sbjct: 8   SAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVE 67

Query: 138 XXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRR--YDPYMAYGXXXXXXXXXXX 195
                  L LNESELHGRQ+KV  KRTNVPGM+Q+R R   + P   +            
Sbjct: 68  VEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF----MPGVPFYP 123

Query: 196 XXXXGKVPRFRRPARYMPY 214
               G+VPRFRRP RY PY
Sbjct: 124 PYAYGRVPRFRRPMRYRPY 142


>AT5G10350.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255674-3256463 REVERSE LENGTH=128
          Length = 128

 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 82/122 (67%), Gaps = 1/122 (0%)

Query: 94  NVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELH 153
           +VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGF              L+LNESELH
Sbjct: 6   HVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELH 65

Query: 154 GRQLKVLPKRTNVPGMKQYRPRRYDPYMAYGXXXXXXXXXXXXXX-XGKVPRFRRPARYM 212
           GRQLKV PKRTNVPGMKQY P R++P M Y                 GK PRFRRP RYM
Sbjct: 66  GRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYM 125

Query: 213 PY 214
           PY
Sbjct: 126 PY 127