Miyakogusa Predicted Gene

Lj0g3v0103919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103919.1 Non Chatacterized Hit- tr|A9NSV8|A9NSV8_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,45.28,3e-17,seg,NULL,CUFF.5904.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52370.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   137   4e-33
AT5G58990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   134   2e-32

>AT5G52370.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:21260558-21261203 REVERSE LENGTH=142
          Length = 142

 Score =  137 bits (344), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 71/83 (85%), Gaps = 1/83 (1%)

Query: 56  NLFEVAQFLPTWGIGYHMAKTHWKEITYEITKINLYKDGKHGKAWGIAHKNGLPIAD-PK 114
           NL EVAQFLP WGIGYHMAK HW  I+YEITKINLYKDG+HGKAWGI HK+GL  A+ PK
Sbjct: 52  NLIEVAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPK 111

Query: 115 KISGVHKRCWKYLPGVAKASESS 137
           KISGVHKRCWKY+P ++K + ++
Sbjct: 112 KISGVHKRCWKYIPNLSKTAPAT 134


>AT5G58990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:23815028-23815819
           FORWARD LENGTH=148
          Length = 148

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 57  LFEVAQFLPTWGIGYHMAKTHWKEITYEITKINLYKDGKHGKAWGIAHKNGLPIAD-PKK 115
           L EVAQFLP WGIGYHMAK HW  I+YEITKINLYKDG+HGKAWGI HK+GL  A+ PKK
Sbjct: 59  LIEVAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKK 118

Query: 116 ISGVHKRCWKYLPGVAKASESS 137
           ISGVHKRCWKY+P ++K + ++
Sbjct: 119 ISGVHKRCWKYIPNLSKTTPAT 140