Miyakogusa Predicted Gene

Lj0g3v0103459.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103459.1 tr|A7RU97|A7RU97_NEMVE Predicted protein
OS=Nematostella vectensis GN=v1g240743 PE=4
SV=1,30.08,5e-17,ATP-synt_10,ATPase assembly factor ATP10,
mitochondria; seg,NULL,NODE_54100_length_1326_cov_21.833334.path1.1
         (271 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08220.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   291   3e-79
AT1G08220.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   253   8e-68

>AT1G08220.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: mitochondrial proton-transporting ATP
           synthase complex assembly; LOCATED IN: mitochondrial
           inner membrane; EXPRESSED IN: 18 plant structures;
           EXPRESSED DURING: 7 growth stages; CONTAINS InterPro
           DOMAIN/s: ATPase assembly factor ATP10, mitochondria
           (InterPro:IPR007849); Has 168 Blast hits to 168 proteins
           in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2;
           Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes
           - 23 (source: NCBI BLink). | chr1:2581574-2583288
           REVERSE LENGTH=274
          Length = 274

 Score =  291 bits (746), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 139/226 (61%), Positives = 170/226 (75%), Gaps = 2/226 (0%)

Query: 33  SLPSHHLA-RLTPKRFLDLHQLGNRAAIEKERARLTDEMNRGYFADMAEFKQHGGKIAEA 91
           SLPS   A R T + FLD ++ GN+ AIE ERARL DEMNRGYFADM EFK+HGGKIA A
Sbjct: 35  SLPSQMPALRSTTRSFLDFYKFGNKKAIEDERARLNDEMNRGYFADMKEFKEHGGKIAAA 94

Query: 92  NKVIIPAMEAVKFPDFEVCYSDGKTMKLPFRLCDNVVGSDKSSVPKATLVCLSFRASSQE 151
           NK IIPA  A+KFP   V +S+GK++KLP     N V ++   VPK +LVCLSFRASSQE
Sbjct: 95  NKTIIPAASAIKFPVLAVTFSNGKSLKLPIAPNSNEVDTESLVVPKVSLVCLSFRASSQE 154

Query: 152 MINSWSRPYAEAFSKSKDVHLYQVSFIDSWLLCRGPVKRFLLWTMKKPNHNESNDTLQRQ 211
           MI+SWS+P+ E+F   KD+ L++VSFID WLL   P+++ LL  ++KPN+NE N  LQRQ
Sbjct: 155 MISSWSKPFLESFGNRKDLQLFEVSFIDKWLLGLAPIRKLLLRVLQKPNNNE-NSVLQRQ 213

Query: 212 TVYSFGDHYYFRKELKILNLLTGYIFLLDNFGRGRWKGSGLATEDE 257
             Y+FGDHYYFRKE+K+LNLLTGYI LLD  GR RW+G G AT +E
Sbjct: 214 VGYAFGDHYYFRKEIKVLNLLTGYILLLDKSGRIRWQGFGTATPEE 259


>AT1G08220.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: mitochondrial proton-transporting ATP
           synthase complex assembly; LOCATED IN: mitochondrial
           inner membrane; EXPRESSED IN: 18 plant structures;
           EXPRESSED DURING: 7 growth stages; CONTAINS InterPro
           DOMAIN/s: ATPase assembly factor ATP10, mitochondria
           (InterPro:IPR007849); Has 152 Blast hits to 152 proteins
           in 76 species: Archae - 6; Bacteria - 0; Metazoa - 2;
           Fungi - 92; Plants - 30; Viruses - 0; Other Eukaryotes -
           22 (source: NCBI BLink). | chr1:2581574-2582850 REVERSE
           LENGTH=202
          Length = 202

 Score =  253 bits (647), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 144/188 (76%), Gaps = 1/188 (0%)

Query: 70  MNRGYFADMAEFKQHGGKIAEANKVIIPAMEAVKFPDFEVCYSDGKTMKLPFRLCDNVVG 129
           MNRGYFADM EFK+HGGKIA ANK IIPA  A+KFP   V +S+GK++KLP     N V 
Sbjct: 1   MNRGYFADMKEFKEHGGKIAAANKTIIPAASAIKFPVLAVTFSNGKSLKLPIAPNSNEVD 60

Query: 130 SDKSSVPKATLVCLSFRASSQEMINSWSRPYAEAFSKSKDVHLYQVSFIDSWLLCRGPVK 189
           ++   VPK +LVCLSFRASSQEMI+SWS+P+ E+F   KD+ L++VSFID WLL   P++
Sbjct: 61  TESLVVPKVSLVCLSFRASSQEMISSWSKPFLESFGNRKDLQLFEVSFIDKWLLGLAPIR 120

Query: 190 RFLLWTMKKPNHNESNDTLQRQTVYSFGDHYYFRKELKILNLLTGYIFLLDNFGRGRWKG 249
           + LL  ++KPN+NE N  LQRQ  Y+FGDHYYFRKE+K+LNLLTGYI LLD  GR RW+G
Sbjct: 121 KLLLRVLQKPNNNE-NSVLQRQVGYAFGDHYYFRKEIKVLNLLTGYILLLDKSGRIRWQG 179

Query: 250 SGLATEDE 257
            G AT +E
Sbjct: 180 FGTATPEE 187