Miyakogusa Predicted Gene

Lj0g3v0103389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103389.1 Non Chatacterized Hit- tr|I1I4F0|I1I4F0_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.6,0.003,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; RNA
recognition motif,RNA recognition motif domain;,CUFF.5853.1
         (83 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs...   153   2e-38
AT4G10110.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    64   3e-11
AT4G13860.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   6e-08
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1...    52   8e-08
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |...    52   8e-08
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |...    50   3e-07
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro...    49   5e-07
AT4G14300.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   7e-07
AT3G52150.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   1e-06
AT3G52150.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   1e-06
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    48   1e-06
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    48   1e-06
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation...    47   2e-06
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr...    47   2e-06
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation...    47   3e-06
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |...    47   4e-06

>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
          family protein | chr2:8031554-8033517 REVERSE
          LENGTH=363
          Length = 363

 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 76/82 (92%)

Query: 1  MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDR 60
          MTTRIAPGVGANLLGQH+AERNQDAT YVG LD Q++EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1  MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61 VTNQHQGYGFVEFRSEEDADYV 82
          VTN HQ YGF+E+RSEEDADY 
Sbjct: 61 VTNLHQNYGFIEYRSEEDADYA 82


>AT4G10110.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr4:6309606-6310809 REVERSE LENGTH=173
          Length = 173

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 46/59 (77%)

Query: 24 DATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYV 82
          + T Y+GN+D ++++ +L+++ +QAG V+++++P+D+ T++ +G+ F E+ +EE ADY 
Sbjct: 6  NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64


>AT4G13860.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr4:8022601-8023162 FORWARD LENGTH=87
          Length = 87

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query: 28 YVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDAD 80
          YVGNL P  T+++L E F   G VV+  V +DR T++ +G+GFV + S  +A+
Sbjct: 6  YVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58


>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
          chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 26 TAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
          + YVG+LD  +T+  L+E F QAG VV+V V +D  T +  GYG+V + + +DA
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDA 99


>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
          chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 26 TAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
          + YVG+LD  +T+  L+E F QAG VV+V V +D  T +  GYG+V + + +DA
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDA 99


>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
          chr1:26999606-27001850 FORWARD LENGTH=461
          Length = 461

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 18 AAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
          A+  +Q    +VGN+    TEE L E+  + GPVV+  +  DR T + +GYGF E++ EE
Sbjct: 2  ASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61

Query: 78 DA 79
           A
Sbjct: 62 TA 63


>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
          protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
          Length = 629

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 24 DATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
          + + YVG+LD  +T+  L++ F Q G VV V V +D VT +  GYG+V F + +DA
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDA 90


>AT4G14300.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:8231179-8232785 FORWARD LENGTH=411
          Length = 411

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 22  NQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADY 81
           N+    +VG L P +T+E   + F   GPV +V +  D+ TN+ +G+GFV F SE+  D 
Sbjct: 107 NKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDS 166

Query: 82  V 82
           V
Sbjct: 167 V 167


>AT3G52150.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19342074-19343090 FORWARD LENGTH=253
          Length = 253

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 28  YVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDAD 80
           YVGNL   +T+E+L  LF + G VV+  V +   T++  G+GFV F SEED +
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVE 232


>AT3G52150.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19342074-19343090 FORWARD LENGTH=253
          Length = 253

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 28  YVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDAD 80
           YVGNL   +T+E+L  LF + G VV+  V +   T++  G+GFV F SEED +
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVE 232


>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 24  DATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
           +++ YVG+LDP + E  L +LF Q  PV N+ V +D +T++  GY +V F + EDA
Sbjct: 58  NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDA 112


>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 24  DATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
           +++ YVG+LDP + E  L +LF Q  PV N+ V +D +T++  GY +V F + EDA
Sbjct: 58  NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDA 112


>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
           initiation factor 3G1 | chr3:3578536-3580366 FORWARD
           LENGTH=321
          Length = 321

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 35/72 (48%)

Query: 8   GVGANLLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQG 67
           G   + +G     RN + +  V NL     E  L ELF   G V  VYV  D+ T   +G
Sbjct: 223 GADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRG 282

Query: 68  YGFVEFRSEEDA 79
           +GFV F S EDA
Sbjct: 283 FGFVNFVSREDA 294


>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
           protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
          Length = 329

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 23  QDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
           ++   YVGNL   IT   L ++F +AG VV+V +  D+VT++ +G+GFV   S E+A
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170


>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
           initiation factor 3G1 | chr3:3578536-3580366 FORWARD
           LENGTH=294
          Length = 294

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 35/72 (48%)

Query: 8   GVGANLLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQG 67
           G   + +G     RN + +  V NL     E  L ELF   G V  VYV  D+ T   +G
Sbjct: 196 GADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRG 255

Query: 68  YGFVEFRSEEDA 79
           +GFV F S EDA
Sbjct: 256 FGFVNFVSREDA 267


>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
           chr2:9943209-9946041 FORWARD LENGTH=662
          Length = 662

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 25  ATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDAD 80
            + YVG+LD  +T+  L++ F +   VV+V V +D  TN   GYG+V + + +DA+
Sbjct: 46  CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAE 101