Miyakogusa Predicted Gene

Lj0g3v0103089.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103089.1 tr|F2E5W3|F2E5W3_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,34.48,4e-19,ZF_RANBP2_1,Zinc finger, RanBP2-type; Ran BP2/NZF
zinc finger-like,NULL; ZF_RANBP2_2,Zinc finger, Ra,CUFF.5827.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55915.1 | Symbols:  | zinc ion binding | chr1:20907663-20909...    99   2e-21

>AT1G55915.1 | Symbols:  | zinc ion binding | chr1:20907663-20909429
           FORWARD LENGTH=404
          Length = 404

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 113/245 (46%), Gaps = 35/245 (14%)

Query: 1   MAEGIPGFGNWFDLPGRRLGGYSPQHPFS--------AAEKWSQVGSLLPSGPRPKRLGG 52
           M++GI G G  FD+PG+RLGG S Q   S        AAEK  + G+LLPSGP  +RLGG
Sbjct: 127 MSKGITGTGQGFDMPGKRLGGLSRQPSLSFLRATAATAAEKRVRAGTLLPSGP--QRLGG 184

Query: 53  DIVTXXXXXXXXXXXXXXXXXXXDNIWCGCEHSDH-EDEDVSYESAENIVHKRKIVGSTK 111
           D                      D+IWCG + +D  EDE+   ++ +  V  R+   S  
Sbjct: 185 DSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALEDEENDSDTYKEPVSIRETCTSVN 244

Query: 112 LTNNSTLPWDQVSQKRSRSKDLILPIHSS--SASMFIDLTEDEQEVGSITQHRNFGLESV 169
                      V +  S S     P  SS    S  IDLTE+  E+    ++R+ G +  
Sbjct: 245 --------GKSVKRCNSWSNAHSCPPSSSHQQGSDVIDLTEESFEIRCTKRNRSPGDQGP 296

Query: 170 SDSQFNSQAG---------SSSHS-----EEPAMWECPMCTLLNMTSASICEFCDTQQPK 215
           S ++    AG         S+S++     EE  MWEC  CTLLN + A ICE C   +PK
Sbjct: 297 SCAKDVPNAGVMKSSIPLPSTSYNANQSREESTMWECAECTLLNPSLAPICELCTAAKPK 356

Query: 216 DVTTK 220
           +   K
Sbjct: 357 EREMK 361