Miyakogusa Predicted Gene

Lj0g3v0103049.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103049.1 Non Chatacterized Hit- tr|A3BAF3|A3BAF3_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,40,1e-18,seg,NULL; DUF4228,Protein of unknown function
DUF4228,CUFF.5821.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66480.1 | Symbols:  | plastid movement impaired 2 | chr1:248...   169   1e-42
AT5G37840.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   153   9e-38
AT2G01340.1 | Symbols: At17.1 | Encodes a protein whose expressi...   150   5e-37
AT1G71015.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   125   2e-29

>AT1G66480.1 | Symbols:  | plastid movement impaired 2 |
           chr1:24805770-24807405 REVERSE LENGTH=225
          Length = 225

 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 123/177 (69%), Gaps = 10/177 (5%)

Query: 1   MGNTIG-RSKRAKVMKVDGETFKVKMPATANDVVKDYPGHVLLDSQAVKHFGLRARPLEP 59
           MGN+I  + KRAKVMK+DGETF++K P TA +V  DYPG+VLLDSQAVKHFG+R++PLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 60  NQELKPKKIYFVVELPKVQEPEEVKTAXXXXXXXXXXXXGIQGMKAKDRLELLMLSKRSV 119
           NQ LKPKK YF+VELPK+  PE                 GI  + AK+RL++LMLS+R+V
Sbjct: 61  NQTLKPKKTYFLVELPKLP-PETTAVDTENKLPYRRVMSGIH-VGAKERLDMLMLSRRTV 118

Query: 120 SDLALVRQPTTNVGLD-----GPMRVKMRLPRAQLEKLMEE-SNDGTEVAEKIMRLY 170
           SD+ + R    + G       G   V++RLPR+Q+ KLMEE +ND + +AEKI+ +Y
Sbjct: 119 SDVTIGRSDGGD-GFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIY 174


>AT5G37840.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has
           1807 Blast hits to 1807 proteins in 277 species: Archae
           - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
           385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:15062192-15063327 REVERSE LENGTH=214
          Length = 214

 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 16/175 (9%)

Query: 1   MGNTIG-RSKRAKVMKVDGETFKVKMPATANDVVKDYPGHVLLDSQAVKHFGLRARPLEP 59
           MGNTI  R  + KVMK+DG+ F++K P TA+D  K+YPG VLLDS+ VK  G+RA+PLEP
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 60  NQELKPKKIYFVVELPKVQEPEEVKTAXXXXXXXXXXXXGIQGMKAKDRLELLMLSKRSV 119
           NQ LKP   YF+V+LP V +  ++               G   + AK+RLE+LMLS+R+V
Sbjct: 61  NQILKPNHTYFLVDLPPVDKRNKLP--------YRRVMSGNIHVGAKERLEMLMLSRRTV 112

Query: 120 SDLALVRQPTTNVGLDGP----MRVKMRLPRAQLEKLMEESNDGTEVAEKIMRLY 170
           SD+   R   ++V  DGP     RV++RLPR+Q+ KLMEES+D +EVA KI+  Y
Sbjct: 113 SDVGAAR---SDVVGDGPELGHTRVRLRLPRSQITKLMEESHDASEVAAKIISAY 164


>AT2G01340.1 | Symbols: At17.1 | Encodes a protein whose expression
           is responsive to nematode infection. |
           chr2:164014-165068 FORWARD LENGTH=215
          Length = 215

 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 115/173 (66%), Gaps = 17/173 (9%)

Query: 1   MGNTIGRSKRAKVMKVDGETFKVKMPATANDVVKDYPGHVLLDSQAVKHFGLRARPLEPN 60
           MGN++G  K  KVMK+DGETFK+K P TA +V+KD+PGHVLLDS++VKH+G RA+PLE  
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 61  QELKPKKIYFVVELPKVQEPEEVKTAXXXXXXXXXXXXGIQGMKAKDRLELLMLSKRSVS 120
           Q L+ K++YFVVE  K   P  V++             GI  + AK+RLE LML++RS S
Sbjct: 61  QRLEAKRLYFVVEPVKECPPRRVRS-------------GIH-VSAKERLESLMLARRSSS 106

Query: 121 DLALVRQP---TTNVGLDGPMRVKMRLPRAQLEKLMEESNDGTEVAEKIMRLY 170
           DL++++ P   TT        RVK+R+P+A+LEKL++E     E  +KI  L+
Sbjct: 107 DLSILKPPGGWTTEEEEGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALF 159


>AT1G71015.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:26789389-26790061 REVERSE
           LENGTH=195
          Length = 195

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 116/173 (67%), Gaps = 18/173 (10%)

Query: 1   MGNTIGRSKRAKVMKVDGETFKVKMPATANDVVKDYPGHVLLDSQAVKHFGLRARPLEPN 60
           MGN++G  K A +M ++GE+FK+K P  A  VVKD+PGHVLL+S+AVK  G+RA+PLEP+
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 61  QELKPKKIYFVVELPKVQE---PEEVKTAXXXXXXXXXXXXGIQGMKAKDRLELLMLSKR 117
           Q L+ K+IYF+VELP+  +   P  V++             GIQ M AK+RLE L LS+R
Sbjct: 61  QNLESKRIYFMVELPRTWKERTPRRVRS-------------GIQ-MSAKERLENLKLSRR 106

Query: 118 SVSDLALVRQPT-TNVGLDGPMRVKMRLPRAQLEKLMEESNDGTEVAEKIMRL 169
           S SDL+++++ T  N        VK++LP+ ++EKL +ES  G++ + KI +L
Sbjct: 107 SSSDLSVMKKKTEVNDEEREVSSVKLKLPKWKIEKLRKESESGSDFSNKITQL 159