Miyakogusa Predicted Gene

Lj0g3v0102959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102959.1 CUFF.5815.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14590.1 | Symbols:  | Isocitrate/isopropylmalate dehydrogena...   205   1e-53
AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase | chr1:20...   189   8e-49
AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocitr...   182   1e-46

>AT5G14590.1 | Symbols:  | Isocitrate/isopropylmalate dehydrogenase
           family protein | chr5:4703533-4706627 REVERSE LENGTH=485
          Length = 485

 Score =  205 bits (521), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 106/125 (84%)

Query: 43  LSFPNRLSLRCFASRATFHTIPVLNPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFD 102
           + F    ++RCFAS      I V NPIVEMDGDEMTR+IW MIK+KLI PYLDL+IKYFD
Sbjct: 56  VQFHRASAVRCFASSGGSDRIQVQNPIVEMDGDEMTRVIWSMIKEKLILPYLDLDIKYFD 115

Query: 103 LGVQNRDATDDRVTVESAEAALRYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNIL 162
           LG+ NRDATDD+VTVESAEAAL+YNVA+KCATITPDE RVKEFGLKSMWRSPNGTIRNIL
Sbjct: 116 LGILNRDATDDKVTVESAEAALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNIL 175

Query: 163 NGCYF 167
           +G  F
Sbjct: 176 DGTVF 180


>AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase |
           chr1:20283520-20286506 FORWARD LENGTH=416
          Length = 416

 Score =  189 bits (480), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 97/108 (89%)

Query: 60  FHTIPVLNPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFDLGVQNRDATDDRVTVES 119
           F  I V+NP+VEMDGDEMTR+IWK IKDKLIFP+L+L+IKYFDLG+ NRD TDD+VT+E+
Sbjct: 3   FEKIKVINPVVEMDGDEMTRVIWKFIKDKLIFPFLELDIKYFDLGLPNRDFTDDKVTIET 62

Query: 120 AEAALRYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNGCYF 167
           AEA L+YNVA+KCATITPDE RV+EFGLK MWRSPNGTIRNILNG  F
Sbjct: 63  AEATLKYNVAIKCATITPDEARVREFGLKKMWRSPNGTIRNILNGTVF 110


>AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocitrate
           dehydrogenase | chr1:24539088-24541861 FORWARD
           LENGTH=410
          Length = 410

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 94/108 (87%)

Query: 60  FHTIPVLNPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFDLGVQNRDATDDRVTVES 119
           F  I V NPIVEMDGDEMTR+IWK IKDKLI P+++L+IKYFDLG+ +RDATDD+VT+ES
Sbjct: 3   FEKIKVANPIVEMDGDEMTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTIES 62

Query: 120 AEAALRYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNGCYF 167
           AEA  +YNVA+KCATITPDE RV EFGLK MWRSPNGTIRNILNG  F
Sbjct: 63  AEATKKYNVAIKCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVF 110