Miyakogusa Predicted Gene
- Lj0g3v0102679.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0102679.1 Non Chatacterized Hit- tr|I3T5D0|I3T5D0_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,67.61,2e-18,coiled-coil,NULL,
NODE_1924_length_869_cov_3268.332520.path2.1
(174 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737616-... 64 4e-11
AT3G14230.3 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737616-... 64 5e-11
AT3G14230.2 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737616-... 64 5e-11
AT1G53910.3 | Symbols: RAP2.12 | related to AP2 12 | chr1:201352... 57 8e-09
AT1G53910.2 | Symbols: RAP2.12 | related to AP2 12 | chr1:201352... 56 1e-08
AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:201352... 56 1e-08
>AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 |
chr3:4737616-4739000 REVERSE LENGTH=379
Length = 379
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 38/179 (21%)
Query: 5 NDNLESYFSSMDQVEQKPLV--NQYANMSPFPG---NGAQLSPFTASADVNAYFSSEHSS 59
N++ ++ F M +E+KP + NQ+ + F NG Q YFSS+ S
Sbjct: 230 NNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ------------YFSSDQGS 277
Query: 60 NSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQNNLQSDSQEMLPMQDDSAKTLTEE 119
NSFD S+ GW + GPKTPEISSML V NN S +E ++AK L
Sbjct: 278 NSFDCSEFGWSDHGPKTPEISSML----------VNNNEASFVEET-----NAAKKLKPN 322
Query: 120 LADIESQLRFFENLDGTWDDA-SFDSLLSGDA---SQDGGNPMNLWSFDDLPAVSGGGF 174
+ + + + +N WD +++L DA +Q+ NP+ LWS D++ + G F
Sbjct: 323 SDESDDLMAYLDN--ALWDTPLEVEAMLGADAGAVTQEEENPVELWSLDEINFMLEGDF 379
>AT3G14230.3 | Symbols: RAP2.2 | related to AP2 2 |
chr3:4737616-4739000 REVERSE LENGTH=374
Length = 374
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 38/179 (21%)
Query: 5 NDNLESYFSSMDQVEQKPLV--NQYANMSPFPG---NGAQLSPFTASADVNAYFSSEHSS 59
N++ ++ F M +E+KP + NQ+ + F NG Q YFSS+ S
Sbjct: 225 NNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ------------YFSSDQGS 272
Query: 60 NSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQNNLQSDSQEMLPMQDDSAKTLTEE 119
NSFD S+ GW + GPKTPEISSML V NN S +E ++AK L
Sbjct: 273 NSFDCSEFGWSDHGPKTPEISSML----------VNNNEASFVEET-----NAAKKLKPN 317
Query: 120 LADIESQLRFFENLDGTWDDA-SFDSLLSGDA---SQDGGNPMNLWSFDDLPAVSGGGF 174
+ + + + +N WD +++L DA +Q+ NP+ LWS D++ + G F
Sbjct: 318 SDESDDLMAYLDN--ALWDTPLEVEAMLGADAGAVTQEEENPVELWSLDEINFMLEGDF 374
>AT3G14230.2 | Symbols: RAP2.2 | related to AP2 2 |
chr3:4737616-4739000 REVERSE LENGTH=375
Length = 375
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 38/179 (21%)
Query: 5 NDNLESYFSSMDQVEQKPLV--NQYANMSPFPG---NGAQLSPFTASADVNAYFSSEHSS 59
N++ ++ F M +E+KP + NQ+ + F NG Q YFSS+ S
Sbjct: 226 NNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ------------YFSSDQGS 273
Query: 60 NSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQNNLQSDSQEMLPMQDDSAKTLTEE 119
NSFD S+ GW + GPKTPEISSML V NN S +E ++AK L
Sbjct: 274 NSFDCSEFGWSDHGPKTPEISSML----------VNNNEASFVEET-----NAAKKLKPN 318
Query: 120 LADIESQLRFFENLDGTWDDA-SFDSLLSGDA---SQDGGNPMNLWSFDDLPAVSGGGF 174
+ + + + +N WD +++L DA +Q+ NP+ LWS D++ + G F
Sbjct: 319 SDESDDLMAYLDN--ALWDTPLEVEAMLGADAGAVTQEEENPVELWSLDEINFMLEGDF 375
>AT1G53910.3 | Symbols: RAP2.12 | related to AP2 12 |
chr1:20135242-20136581 FORWARD LENGTH=356
Length = 356
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 26/126 (20%)
Query: 52 YFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQNNLQSDSQEMLPMQDD 111
YFSS+ SNSFD S+ GW +Q P TP+ISS + + +++ + + +
Sbjct: 254 YFSSDQGSNSFDCSEFGWSDQAPITPDISSAV--------------INNNNSALFFEEAN 299
Query: 112 SAKTLTEELADIESQLRFFENLDGTWDDASFDSLLSGDA--SQD-GGNPMNLWSFDDLPA 168
AK L + F + T DAS D L+ DA +QD G NPM+LWS D++ +
Sbjct: 300 PAKKL--------KSMDFETPYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHS 350
Query: 169 VSGGGF 174
+ GG F
Sbjct: 351 MIGGVF 356
>AT1G53910.2 | Symbols: RAP2.12 | related to AP2 12 |
chr1:20135242-20136581 FORWARD LENGTH=358
Length = 358
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 26/126 (20%)
Query: 52 YFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQNNLQSDSQEMLPMQDD 111
YFSS+ SNSFD S+ GW +Q P TP+ISS + + +++ + + +
Sbjct: 256 YFSSDQGSNSFDCSEFGWSDQAPITPDISSAV--------------INNNNSALFFEEAN 301
Query: 112 SAKTLTEELADIESQLRFFENLDGTWDDASFDSLLSGDA--SQD-GGNPMNLWSFDDLPA 168
AK L + F + T DAS D L+ DA +QD G NPM+LWS D++ +
Sbjct: 302 PAKKL--------KSMDFETPYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHS 352
Query: 169 VSGGGF 174
+ GG F
Sbjct: 353 MIGGVF 358
>AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 |
chr1:20135242-20136581 FORWARD LENGTH=358
Length = 358
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 26/126 (20%)
Query: 52 YFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQNNLQSDSQEMLPMQDD 111
YFSS+ SNSFD S+ GW +Q P TP+ISS + + +++ + + +
Sbjct: 256 YFSSDQGSNSFDCSEFGWSDQAPITPDISSAV--------------INNNNSALFFEEAN 301
Query: 112 SAKTLTEELADIESQLRFFENLDGTWDDASFDSLLSGDA--SQD-GGNPMNLWSFDDLPA 168
AK L + F + T DAS D L+ DA +QD G NPM+LWS D++ +
Sbjct: 302 PAKKL--------KSMDFETPYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHS 352
Query: 169 VSGGGF 174
+ GG F
Sbjct: 353 MIGGVF 358