Miyakogusa Predicted Gene
- Lj0g3v0102549.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0102549.1 tr|A9SRP5|A9SRP5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_187673,30.8,8e-19,seg,NULL,CUFF.5791.1
(279 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G25730.1 | Symbols: | unknown protein; Has 157 Blast hits to... 204 5e-53
AT2G25730.2 | Symbols: | unknown protein; LOCATED IN: cellular_... 204 6e-53
>AT2G25730.1 | Symbols: | unknown protein; Has 157 Blast hits to
144 proteins in 62 species: Archae - 0; Bacteria - 0;
Metazoa - 101; Fungi - 0; Plants - 35; Viruses - 0;
Other Eukaryotes - 21 (source: NCBI BLink). |
chr2:10956751-10972729 REVERSE LENGTH=2464
Length = 2464
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 158/280 (56%), Gaps = 19/280 (6%)
Query: 1 MGKETEILSRLAANHLHLAQFEPXXXXXXXXXXXXXXXXXXILQTIVARSGRFPNIAWST 60
M KETEILSRLAANHLHLAQFEP ILQTIV+ +GRF N+ WS
Sbjct: 1 MDKETEILSRLAANHLHLAQFEPLKATLLALRVRNPDLALTILQTIVSNAGRFDNVLWSR 60
Query: 61 SCPSPAHLTYLSTLELLQFDGDASSAWSFDPETLRLRAEFLLLVQNLIDLVSENEGLLDK 120
SCPSP+ L++LST+ELL+F+ + +S W FD ETL LRA+FLL+VQ LID V+E ++
Sbjct: 61 SCPSPSLLSFLSTIELLRFE-NPTSPWGFDSETLSLRADFLLMVQVLIDRVTERIKEDEE 119
Query: 121 DGGEWE---MCRRVLDRGMELGVKRLSVDEDGGGSERSETSVAPVEEDELMSLRKLVLNH 177
E C RVL +ELGV+RL D SE S +EED ++SLR +VL++
Sbjct: 120 SEDENSGLGNCLRVLQGVLELGVERLKFVVDTSSSEGSNK----IEEDAVVSLRSIVLDY 175
Query: 178 ADIFDALCGNIHRQIRHWECEDPGLAXXXXXXXXXXXXXXXXMLSG-----------IQR 226
+D+FDALC NI RQ+ E L + IQR
Sbjct: 176 SDVFDALCCNIQRQLAGCESYGTCLVEEVQGEEQRKEMNEATCIGSPELDNINVFALIQR 235
Query: 227 TVQVVHLDAMRESIKAGEAEGAVSHIRFLHFDHGLEQSEY 266
VQ+ LDAM+ + G+ GA IR+LH D+G+E+ Y
Sbjct: 236 NVQLAQLDAMKTKLDEGDERGAADRIRYLHLDYGVEKENY 275
>AT2G25730.2 | Symbols: | unknown protein; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages. |
chr2:10956751-10972729 REVERSE LENGTH=2487
Length = 2487
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 158/280 (56%), Gaps = 19/280 (6%)
Query: 1 MGKETEILSRLAANHLHLAQFEPXXXXXXXXXXXXXXXXXXILQTIVARSGRFPNIAWST 60
M KETEILSRLAANHLHLAQFEP ILQTIV+ +GRF N+ WS
Sbjct: 1 MDKETEILSRLAANHLHLAQFEPLKATLLALRVRNPDLALTILQTIVSNAGRFDNVLWSR 60
Query: 61 SCPSPAHLTYLSTLELLQFDGDASSAWSFDPETLRLRAEFLLLVQNLIDLVSENEGLLDK 120
SCPSP+ L++LST+ELL+F+ + +S W FD ETL LRA+FLL+VQ LID V+E ++
Sbjct: 61 SCPSPSLLSFLSTIELLRFE-NPTSPWGFDSETLSLRADFLLMVQVLIDRVTERIKEDEE 119
Query: 121 DGGEWE---MCRRVLDRGMELGVKRLSVDEDGGGSERSETSVAPVEEDELMSLRKLVLNH 177
E C RVL +ELGV+RL D SE S +EED ++SLR +VL++
Sbjct: 120 SEDENSGLGNCLRVLQGVLELGVERLKFVVDTSSSEGSNK----IEEDAVVSLRSIVLDY 175
Query: 178 ADIFDALCGNIHRQIRHWECEDPGLAXXXXXXXXXXXXXXXXMLSG-----------IQR 226
+D+FDALC NI RQ+ E L + IQR
Sbjct: 176 SDVFDALCCNIQRQLAGCESYGTCLVEEVQGEEQRKEMNEATCIGSPELDNINVFALIQR 235
Query: 227 TVQVVHLDAMRESIKAGEAEGAVSHIRFLHFDHGLEQSEY 266
VQ+ LDAM+ + G+ GA IR+LH D+G+E+ Y
Sbjct: 236 NVQLAQLDAMKTKLDEGDERGAADRIRYLHLDYGVEKENY 275