Miyakogusa Predicted Gene

Lj0g3v0102289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102289.1 Non Chatacterized Hit- tr|I3SC80|I3SC80_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.06,0,DNA_pol3_delta2,NULL; Rep_fac_C,Replication factor C,
C-terminal domain; REPLICATION FACTOR C / DNA ,CUFF.5766.1
         (321 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27740.1 | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase fa...   551   e-157
AT1G21690.1 | Symbols: EMB1968, RFC4 | ATPase family associated ...   124   1e-28
AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with v...   124   1e-28
AT1G21690.4 | Symbols: EMB1968 | ATPase family associated with v...   120   1e-27
AT1G21690.2 | Symbols: EMB1968, RFC4 | ATPase family associated ...   114   1e-25
AT1G77470.1 | Symbols: RFC3, RFC5 | replication factor C subunit...   111   7e-25
AT1G63160.1 | Symbols: RFC2 | replication factor C 2 | chr1:2342...   102   5e-22
AT4G18820.1 | Symbols:  | AAA-type ATPase family protein | chr4:...    52   5e-07
AT5G45720.1 | Symbols:  | AAA-type ATPase family protein | chr5:...    48   7e-06
AT5G45720.2 | Symbols:  | AAA-type ATPase family protein | chr5:...    48   9e-06

>AT5G27740.1 | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase
           family associated with various cellular activities (AAA)
            | chr5:9823831-9826869 FORWARD LENGTH=354
          Length = 354

 Score =  551 bits (1421), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 252/320 (78%), Positives = 289/320 (90%)

Query: 1   MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60
           MLWVDKYRPK+LD+V+VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTLIMALL+Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  TAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKN 120
            +AEKVKVENR WKVDAGSR+IDLELTTLSS +H+E++PSDAGFQDRY+VQEIIKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180
           RPIDTKGKKG+KVLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY 240
           CLN+RINAPS+E+IV+V+EF+ KKE LQ+P GFAARIAEKSNR+LRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFTNRQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEMIXXXXXXX 300
           PFT  Q I PMDWEEY++EIA+D+MKEQSPK+LFQVRGK+YELL+NCIPPE+I       
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query: 301 XXXXXXXXXKHEVCHWAAYY 320
                    K EVCHWAAYY
Sbjct: 301 LLKKLDSELKLEVCHWAAYY 320


>AT1G21690.1 | Symbols: EMB1968, RFC4 | ATPase family associated
           with various cellular activities (AAA)  |
           chr1:7615675-7618362 FORWARD LENGTH=339
          Length = 339

 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 37/234 (15%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
             K +V                          +E++ SD    DR   VV+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                  + G     FK+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
            + SRC   R    SEE +   I  I  +EGL +     + ++  S  +LRRAI
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 214


>AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with
           various cellular activities (AAA)  |
           chr1:7615675-7618421 FORWARD LENGTH=341
          Length = 341

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 117/239 (48%), Gaps = 37/239 (15%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
             K +V                          +E++ SD    DR   VV+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                  + G     FK+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFET 234
            + SRC   R    SEE +   I  I  +EGL +     + ++  S  +LRRAI   ++
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQS 219


>AT1G21690.4 | Symbols: EMB1968 | ATPase family associated with
           various cellular activities (AAA)  |
           chr1:7615675-7618362 FORWARD LENGTH=332
          Length = 332

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 112/234 (47%), Gaps = 44/234 (18%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGV- 69

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
                                           +E++ SD    DR   VV+  IK+ A  
Sbjct: 70  --------------------------------LELNASD----DRGINVVRTKIKDFAAV 93

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                  + G     FK+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 94  AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 153

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
            + SRC   R    SEE +   I  I  +EGL +     + ++  S  +LRRAI
Sbjct: 154 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 207


>AT1G21690.2 | Symbols: EMB1968, RFC4 | ATPase family associated
           with various cellular activities (AAA)  |
           chr1:7615675-7618362 FORWARD LENGTH=327
          Length = 327

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 113/239 (47%), Gaps = 49/239 (20%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   ++V            CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTALAIAHQLFGPE 58

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
             K +V                          +E++ SD    DR   VV+  IK+ A  
Sbjct: 59  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 88

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                  + G     FK+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 89  AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 148

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFET 234
            + SRC   R    SEE +   I  I  +EGL +     + ++  S  +LRRAI   ++
Sbjct: 149 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQS 207


>AT1G77470.1 | Symbols: RFC3, RFC5 | replication factor C subunit 3
           | chr1:29112194-29114323 REVERSE LENGTH=369
          Length = 369

 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 122/246 (49%), Gaps = 32/246 (13%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRP++LD V  H D+   + +L  E   PHLL YGP G+GK + I+A+ R+++G  
Sbjct: 41  WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP- 99

Query: 63  AEKVKVENRTWKVDAG-SRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNR 121
               K  N   +++A   R ID                         VV++ I++ A  +
Sbjct: 100 ----KYRNMILELNASDDRGID-------------------------VVRQQIQDFASTQ 130

Query: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRC 181
              + GK   K+++L++ D ++++AQ +LRR +EKY+   R  L  N  +++  A++SRC
Sbjct: 131 SF-SLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRC 189

Query: 182 LNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQYP 241
              R        + + ++ + + E L +     A +   SN ++R+A+   ++  +    
Sbjct: 190 TRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKE 249

Query: 242 FTNRQT 247
            T  ++
Sbjct: 250 ITEEES 255


>AT1G63160.1 | Symbols: RFC2 | replication factor C 2 |
           chr1:23422068-23423771 REVERSE LENGTH=333
          Length = 333

 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 34/247 (13%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRP  +  ++ ++D    L+ +  + + P+L+  GP G+GK T I+AL  ++ GT 
Sbjct: 17  WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTN 76

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNRP 122
            ++  +E       +  R ID                         VV+  IK  A+ + 
Sbjct: 77  YKEAVLELNA----SDDRGID-------------------------VVRNKIKMFAQKKV 107

Query: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCL 182
               G+   KV++L++ D ++  AQ +LRRT+E YS   R  L CN+S+++ E I+SRC 
Sbjct: 108 TLPPGRH--KVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCA 165

Query: 183 NIRINAPSEEQIV-EVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQYP 241
            +R +  S++QI+  ++  +  ++   +P G  A I   ++ ++R+A+ + +      + 
Sbjct: 166 LVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEA-IIFTADGDMRQALNNLQAT-FSGFS 223

Query: 242 FTNRQTI 248
           F N++ +
Sbjct: 224 FVNQENV 230


>AT4G18820.1 | Symbols:  | AAA-type ATPase family protein |
           chr4:10330371-10334090 FORWARD LENGTH=1097
          Length = 1097

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 26/236 (11%)

Query: 4   VDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHL-LFYGPSGSGKKTLIMALLRQMFGTA 62
            +KY PKT   ++  + V Q L   V  +    L +F+GP+G+GK +      R +   +
Sbjct: 434 TEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALNCHS 493

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPS----DAGFQDRYVVQEIIKEMA 118
            E+ K                    T SS    +M  S    + G    Y  ++I+  + 
Sbjct: 494 MEQPK-----------------PCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLD 536

Query: 119 KNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSA-YCRLILCCNSSSRVTEAI 177
            N  + ++  +   V + +D D LS +  ++L + +++ +  +   IL C+S   +   I
Sbjct: 537 GNVMVSSQSPR---VFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVI 593

Query: 178 RSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFE 233
            SRC         +  IV  +++I  KE ++I       IA +S+ +LR A ++ E
Sbjct: 594 ISRCQKFFFPKLKDADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLE 649


>AT5G45720.1 | Symbols:  | AAA-type ATPase family protein |
           chr5:18543338-18546629 REVERSE LENGTH=966
          Length = 966

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 99/232 (42%), Gaps = 19/232 (8%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHL-LFYGPSGSGKKTLIMALLRQMFGT 61
           +  KY P+T   ++  + V Q L   + ++    L +F+GP+G+GK +      R +   
Sbjct: 345 FTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCH 404

Query: 62  AAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNR 121
           + E+ K          G  S  +      + +  EM P  +   +  + +  I++  K +
Sbjct: 405 STEQSK--------PCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTNIRQQQKQQ 456

Query: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRC 181
                      VL+ +D D +S +  ++L + +++       +L C+S   +   I SRC
Sbjct: 457 L----------VLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRC 506

Query: 182 LNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFE 233
                    +  I++ ++ I  KE + I       +A +S+ +LR A ++ E
Sbjct: 507 QKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLE 558


>AT5G45720.2 | Symbols:  | AAA-type ATPase family protein |
           chr5:18543338-18546629 REVERSE LENGTH=956
          Length = 956

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 99/232 (42%), Gaps = 19/232 (8%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHL-LFYGPSGSGKKTLIMALLRQMFGT 61
           +  KY P+T   ++  + V Q L   + ++    L +F+GP+G+GK +      R +   
Sbjct: 345 FTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCH 404

Query: 62  AAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNR 121
           + E+ K          G  S  +      + +  EM P  +   +  + +  I++  K +
Sbjct: 405 STEQSK--------PCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTNIRQQQKQQ 456

Query: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRC 181
                      VL+ +D D +S +  ++L + +++       +L C+S   +   I SRC
Sbjct: 457 ----------LVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRC 506

Query: 182 LNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFE 233
                    +  I++ ++ I  KE + I       +A +S+ +LR A ++ E
Sbjct: 507 QKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLE 558