Miyakogusa Predicted Gene

Lj0g3v0102189.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102189.1 tr|G7ZYM9|G7ZYM9_MEDTR FBD-associated F-box
protein OS=Medicago truncatula GN=MTR_076s0012 PE=4
SV=1,35.84,9e-18,domain in FBox and BRCT domain containing pl,FBD;
FBD,FBD,CUFF.5758.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78750.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    48   4e-06
AT3G50710.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    47   7e-06

>AT1G78750.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr1:29613122-29614695 REVERSE LENGTH=458
          Length = 458

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 25/152 (16%)

Query: 11  PVFVFRNLISIELCFDNYFSVWDGVLEVLSYCPKLQNLAIEKPAFKGLYKDGVLVELPYR 70
           P+ +FRNL S+ + F  Y   W+ +   L  CP L++L +    ++   K+G+ +    R
Sbjct: 331 PLPLFRNLSSLRVDFYGY--KWEMLPIFLESCPNLKSLVVGSANYRE--KEGINILSVPR 386

Query: 71  PMLQTLIDMQFHKEKWAELVPECVSLHLTTCSIRNYRGWDDDFKFAEFILQNVSFLQTMT 130
             L +L               E V +       R  +G   + K   ++L+N + L+ +T
Sbjct: 387 GFLSSL---------------EYVKIE------RPLKGEAMEMKLVSYLLENSTILKKLT 425

Query: 131 LHSAPSRKEEKQWVFKHLSWCPRISTACKIFL 162
           L    S K+E+  + K L+  PR+S+AC++ +
Sbjct: 426 LCLDDSIKKEESVILKELNTIPRLSSACQVVI 457


>AT3G50710.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr3:18845199-18846673
           REVERSE LENGTH=427
          Length = 427

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 24/154 (15%)

Query: 15  FRNLISIELCFDNYFSVWDGVLEVLSYCPKLQNLAI-EKPAFKGLYKDGVLVELPYRPML 73
           F  L+ +ELC D     WD +  +L   PKLQ L I E    +  Y D  +         
Sbjct: 293 FYQLVHLELCGDA-LMWWDLLTWMLQSSPKLQVLKIYECKCEEHDYLDDPI--------- 342

Query: 74  QTLIDMQFHKEKWAE--LVPECVSLHLTTCSIRNYRGWDDDFKFAEFILQNVSFLQTMTL 131
                    +E W E   VP+C+  HL     + Y   D++ K   +IL+N   L+T T 
Sbjct: 343 ---------EEHWEEPSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKTATF 393

Query: 132 HSAPSR--KEEKQWVFKHLSWCPRISTACKIFLN 163
            +A     KEE+      L +  R S++C++ L+
Sbjct: 394 SAASYLYPKEERSRELNELVYMARASSSCQLLLD 427