Miyakogusa Predicted Gene

Lj0g3v0102179.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102179.1 tr|B9HUP2|B9HUP2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_769234 PE=4
SV=1,57.99,0,LysM,Peptidoglycan-binding lysin domain; FAMILY NOT
NAMED,NULL; seg,NULL; no description,NULL; LysM ,CUFF.5757.1
         (396 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23770.1 | Symbols:  | protein kinase family protein / peptid...    77   3e-14
AT3G01840.1 | Symbols:  | Protein kinase superfamily protein | c...    63   3e-10
AT2G17120.1 | Symbols: LYM2 | lysm domain GPI-anchored protein 2...    54   3e-07
AT3G21630.1 | Symbols: CERK1, LYSM RLK1 | chitin elicitor recept...    52   5e-07

>AT2G23770.1 | Symbols:  | protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein |
           chr2:10120242-10122080 REVERSE LENGTH=612
          Length = 612

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 24/194 (12%)

Query: 60  AYAFYRANSPNFLDLATIGDLFSVSRLMIAKXXXXXXXXXXXXXXXXXFVPLSCSCNSVN 119
           AY  +R+ +P+F  + +I  LFSV   +++                   +PL+CSC    
Sbjct: 57  AYVIFRS-TPSFSTVTSISSLFSVDPSLVSSLNDASPSTSFPSGQQV-IIPLTCSCT--- 111

Query: 120 TTFGSISYANISYTIKPNDTFFIVSSTHFQNLTTYPSV----EVVNPTLLPTNLQIGDNV 175
              G  S +NI+YTI+PND++F +++   Q L+T  ++     V + +L P     G  +
Sbjct: 112 ---GDDSQSNITYTIQPNDSYFAIANDTLQGLSTCQALAKQNNVSSQSLFP-----GMRI 163

Query: 176 VFPVFCKCP-----NKTISNYMISYVVQPSDNISSIASRFGAREQSIIDANGGGDDALHV 230
           V P+ C CP     N+    Y++SY V   D I+ I+ RFG      + AN    +   V
Sbjct: 164 VVPIRCACPTAKQINEDGVKYLMSYTVVFEDTIAIISDRFGVETSKTLKANEMSFENSEV 223

Query: 231 --YDTIFIPVTRLP 242
             + TI IP+   P
Sbjct: 224 FPFTTILIPLVNPP 237


>AT3G01840.1 | Symbols:  | Protein kinase superfamily protein |
           chr3:296582-298634 REVERSE LENGTH=654
          Length = 654

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 13/118 (11%)

Query: 108 FVPLSCSCNSVNTTFGSISYANISYTIKPNDTFFIVSSTHFQNLTTYPSVEVVNPTLLPT 167
            +P+ C CN      GSI  A++       DTF  VS +  Q LTT  S+   NP +  +
Sbjct: 95  LIPIECRCN------GSIYEASLIKNCVKGDTFRSVSQS-LQGLTTCLSIREKNPHI--S 145

Query: 168 NLQIGDNVVF--PVFCKCPNKTISN--YMISYVVQPSDNISSIASRFGAREQSIIDAN 221
             ++GDN+     + C CP + +SN  ++++Y V   D++SS+A RF   E +I+ AN
Sbjct: 146 EDKLGDNIKLRLAIRCSCPQEGVSNASFLVTYPVGVRDSVSSLAVRFNTTEDAIVSAN 203


>AT2G17120.1 | Symbols: LYM2 | lysm domain GPI-anchored protein 2
           precursor | chr2:7459156-7460648 FORWARD LENGTH=350
          Length = 350

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 8/133 (6%)

Query: 109 VPLSCSCNSVNTTFGSISYANISYTIKPNDTFFIVSSTHFQNLTTYPSVEVVNPTLLPTN 168
           VP+ CSC+  N T   +S  +I YTIK +D    V++  F  L TY  +  VN    P  
Sbjct: 91  VPIHCSCS--NGT--GVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNK 146

Query: 169 LQIGDNVVFPVFCKCPNKTISNYMISY--VVQPSDNISSIASRFGAREQSIIDANG-GGD 225
           ++IG     P+ C C +K     ++ Y  VV+   ++  IA++FG    ++   NG  GD
Sbjct: 147 IEIGQKFWIPLPCSC-DKLNGEDVVHYAHVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGD 205

Query: 226 DALHVYDTIFIPV 238
             L     + +P+
Sbjct: 206 SQLLADKPLDVPL 218


>AT3G21630.1 | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor
           kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617
          Length = 617

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 108 FVPLSCSCNSVNTTFGSISYANISYTIKPNDTFFIVSSTHFQNLTTYPSVEVVNPTLLPT 167
            VP  C C       G     N SY+++  DT+  V+ +++ NLTT  S++  NP    T
Sbjct: 86  LVPFPCECQP-----GDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNP-FPAT 139

Query: 168 NLQIGDNVVFPVFCKCPNKTIS---NYMISYVVQPSDNISSIASRFG 211
           N+ +   +   V C C ++++S      ++Y ++P D++SSIA   G
Sbjct: 140 NIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSG 186