Miyakogusa Predicted Gene

Lj0g3v0102019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102019.1 tr|D7L8X6|D7L8X6_ARALL Transcription initiation
factor IIB-2 OS=Arabidopsis lyrata subsp. lyrata GN=,92.02,0,no
description,Cyclin-like; TRANSCRIPTION INITIATION FACTOR
IIB-RELATED,Transcription factor TFIIB; ,CUFF.5743.1
         (238 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10330.1 | Symbols:  | Cyclin-like family protein | chr3:3199...   408   e-114
AT2G41630.1 | Symbols: TFIIB | transcription factor IIB | chr2:1...   382   e-106
AT3G57370.1 | Symbols:  | Cyclin family protein | chr3:21226839-...   152   2e-37
AT3G29380.1 | Symbols:  | Cyclin-like family protein | chr3:1128...   146   1e-35
AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-relat...    94   1e-19
AT4G36650.2 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-relat...    82   4e-16
AT4G10680.1 | Symbols:  | transcription factor IIB (TFIIB) famil...    48   5e-06

>AT3G10330.1 | Symbols:  | Cyclin-like family protein |
           chr3:3199907-3201642 FORWARD LENGTH=312
          Length = 312

 Score =  408 bits (1048), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/238 (82%), Positives = 205/238 (86%)

Query: 1   MISNPKXXXXXXXXXXXXRWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYK 60
           +IS P             RWQNRGSNPDR LI+AFKTIATM+DRLGLVATIKDRANEIYK
Sbjct: 75  VISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIKDRANEIYK 134

Query: 61  RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQL 120
           RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS+ANGATKKEIGRAKEYIVKQL
Sbjct: 135 RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 194

Query: 121 GLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVI 180
           GLE GQ VEMGTIHAGDFMRRFCSNLGM N            SEEFDIRRSPISI AAVI
Sbjct: 195 GLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISIAAAVI 254

Query: 181 YIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           YIITQLSD+KKPL+DIS+ATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct: 255 YIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312


>AT2G41630.1 | Symbols: TFIIB | transcription factor IIB |
           chr2:17355555-17357400 REVERSE LENGTH=312
          Length = 312

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/238 (78%), Positives = 198/238 (83%)

Query: 1   MISNPKXXXXXXXXXXXXRWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYK 60
           +I+ P             RWQNR SN DR LI AFKTIATMS+RLGLVATIKDRANE+YK
Sbjct: 75  VIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLGLVATIKDRANELYK 134

Query: 61  RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQL 120
           R+EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC IANGATKKEIGRAK+YIVK L
Sbjct: 135 RLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDYIVKTL 194

Query: 121 GLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVI 180
           GLE GQSV++GTIHAGDFMRRFCSNL M+N            SEEFDIRRSPISI A VI
Sbjct: 195 GLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISIAAVVI 254

Query: 181 YIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           YIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNLSSP
Sbjct: 255 YIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312


>AT3G57370.1 | Symbols:  | Cyclin family protein |
           chr3:21226839-21228475 REVERSE LENGTH=360
          Length = 360

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 125/207 (60%), Gaps = 6/207 (2%)

Query: 33  LAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPR 92
           L+  +I  +S+ L L ATIK +ANEI+K VE    +RG+ ++ L AAC+YIACR  D  R
Sbjct: 159 LSIVSIEAISNGLKLPATIKGQANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTR 216

Query: 93  TVKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXX 152
           T++EI   AN A+  +I     +I ++L + K   +   +I   +F++RFCS   ++   
Sbjct: 217 TMREISRFANKASISDISETVGFIAEKLEINKNWYM---SIETANFIKRFCSIFRLDKEA 273

Query: 153 XXXXXXXXXXSEEF-DIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSY 211
                      +   + RR+P+S+ A ++Y+I +LS +K  LK +  ATGVAE TI+ +Y
Sbjct: 274 VEAALEAAESYDYMTNGRRAPVSVAAGIVYVIARLSYEKHLLKGLIEATGVAENTIKGTY 333

Query: 212 KDLYPHVSKIIPTWYAKEEDLKNLSSP 238
            DLYP++  I+PTW+A   DLKNL +P
Sbjct: 334 GDLYPNLPTIVPTWFANANDLKNLGAP 360


>AT3G29380.1 | Symbols:  | Cyclin-like family protein |
           chr3:11282407-11283524 REVERSE LENGTH=336
          Length = 336

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 10/222 (4%)

Query: 19  RWQNRGSNPDRTLI-LAFKTIATMSDRLGLVATIKDRANEIYKRVE---DQKSSRGRNQD 74
           R  N+  N +  LI  AF+ I  M+D L L   I  RA EI  + +   + K  RG+  +
Sbjct: 99  RAHNQVKNHEEDLIKQAFEEIQRMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLN 158

Query: 75  ALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLEKGQ---SVEMG 131
           A+ AA +  ACR+    RT+KEI  +ANG  KK+I   KE +V +  LE  Q   S    
Sbjct: 159 AICAASVSTACRELQLSRTLKEIAEVANGVDKKDIR--KESLVIKRVLESHQTSVSASQA 216

Query: 132 TIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVIYIITQLSD-DK 190
            I+ G+ +RRFCS L ++             +E FDIRR+P S+ AA+I++I+ +S  ++
Sbjct: 217 IINTGELVRRFCSKLDISQREIMAIPEAVEKAENFDIRRNPKSVLAAIIFMISHISQTNR 276

Query: 191 KPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDL 232
           KP+++I I   V E TI+NS KD+YP+  KIIP WYA E D+
Sbjct: 277 KPIREIGIVAEVVENTIKNSVKDMYPYALKIIPNWYACESDI 318


>AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
           protein | chr4:17283283-17285527 REVERSE LENGTH=503
          Length = 503

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 34  AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 93
           A+  I  ++  LGL   I + A ++++        R R+ +AL  ACL  A R+  +PRT
Sbjct: 133 AYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEPRT 192

Query: 94  VKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXX 153
           ++EI SIA    +KEIG+  + + + L L +  +    ++H    M RFC+ L +N    
Sbjct: 193 LQEI-SIAANVQQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKSAQ 247

Query: 154 XXXXX--XXXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSY 211
                      ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+R  Y
Sbjct: 248 ELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLTEVTLRKVY 307

Query: 212 KDLYPHVSKIIPTWY 226
           K+L  +   ++P+ Y
Sbjct: 308 KELLENWDDLLPSNY 322


>AT4G36650.2 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
           protein | chr4:17283600-17285527 REVERSE LENGTH=369
          Length = 369

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 34  AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 93
           A+  I  ++  LGL   I + A ++++        R R+ +AL  ACL  A R+  +PRT
Sbjct: 133 AYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEPRT 192

Query: 94  VKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXX 153
           ++EI SIA    +KEIG+  + + + L L +  +    ++H    M RFC+ L +N    
Sbjct: 193 LQEI-SIAANVQQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKSAQ 247

Query: 154 XXXXX--XXXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAE 204
                      ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E
Sbjct: 248 ELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLTE 300


>AT4G10680.1 | Symbols:  | transcription factor IIB (TFIIB) family
           protein | chr4:6587521-6588069 FORWARD LENGTH=182
          Length = 182

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 33  LAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPR 92
           +A+  I  M++ LGL   I + A +I  +++ +    G++   L AA +  ACRQ + P+
Sbjct: 93  IAYAEIERMTEALGLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPK 152

Query: 93  TVKEICSIANGATKKEIGRAKEYIVKQLG 121
           T+KEI ++AN    KEI +A    VK LG
Sbjct: 153 TLKEISAVAN-VDMKEINKA----VKLLG 176