Miyakogusa Predicted Gene

Lj0g3v0101809.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101809.1 Non Chatacterized Hit- tr|D8RPF0|D8RPF0_SELML
Putative uncharacterized protein (Fragment) OS=Selagin,56.96,4e-19,no
description,Nucleotide-binding, alpha-beta plait; seg,NULL;
RNA-binding domain, RBD,NULL;
RRM,RNA,NODE_40706_length_490_cov_160.493881.path3.1
         (166 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35785.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   134   2e-32
AT4G35785.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   134   3e-32
AT4G35785.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   134   3e-32
AT4G35785.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   134   3e-32
AT4G35785.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   134   4e-32
AT1G07350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   108   1e-24
AT1G07350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   107   3e-24
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1...    53   1e-07
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |...    53   1e-07
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei...    52   1e-07
AT5G04280.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   9e-07
AT2G21440.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   3e-06
AT1G60650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   3e-06
AT1G60650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   3e-06
AT4G19610.1 | Symbols:  | nucleotide binding;nucleic acid bindin...    47   8e-06

>AT4G35785.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:16953708-16955127 REVERSE LENGTH=207
          Length = 207

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 71/79 (89%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N G TLYVTGLS+RVT++DLE HFAKEGKVASCFLV+EPRTR+SRGFAF+TM +++ A R
Sbjct: 69  NPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128

Query: 148 CFKYLNQSVLECRYLTVER 166
           C KYLNQSVLE RY+TVER
Sbjct: 129 CIKYLNQSVLEGRYITVER 147


>AT4G35785.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:16953404-16955127 REVERSE LENGTH=244
          Length = 244

 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 71/79 (89%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N G TLYVTGLS+RVT++DLE HFAKEGKVASCFLV+EPRTR+SRGFAF+TM +++ A R
Sbjct: 83  NPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 142

Query: 148 CFKYLNQSVLECRYLTVER 166
           C KYLNQSVLE RY+TVER
Sbjct: 143 CIKYLNQSVLEGRYITVER 161


>AT4G35785.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:16953211-16955127 REVERSE LENGTH=238
          Length = 238

 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 71/79 (89%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N G TLYVTGLS+RVT++DLE HFAKEGKVASCFLV+EPRTR+SRGFAF+TM +++ A R
Sbjct: 68  NPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127

Query: 148 CFKYLNQSVLECRYLTVER 166
           C KYLNQSVLE RY+TVER
Sbjct: 128 CIKYLNQSVLEGRYITVER 146


>AT4G35785.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:16953211-16955127 REVERSE LENGTH=239
          Length = 239

 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 71/79 (89%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N G TLYVTGLS+RVT++DLE HFAKEGKVASCFLV+EPRTR+SRGFAF+TM +++ A R
Sbjct: 69  NPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128

Query: 148 CFKYLNQSVLECRYLTVER 166
           C KYLNQSVLE RY+TVER
Sbjct: 129 CIKYLNQSVLEGRYITVER 147


>AT4G35785.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:16953404-16955127 REVERSE LENGTH=201
          Length = 201

 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 71/79 (89%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N G TLYVTGLS+RVT++DLE HFAKEGKVASCFLV+EPRTR+SRGFAF+TM +++ A R
Sbjct: 83  NPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 142

Query: 148 CFKYLNQSVLECRYLTVER 166
           C KYLNQSVLE RY+TVER
Sbjct: 143 CIKYLNQSVLEGRYITVER 161


>AT1G07350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2257732-2260101 REVERSE LENGTH=382
          Length = 382

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N GN+LYVTGLS RVTERDLE+HFAKEGKV    LV++P TR SRGF FI+M +V  ANR
Sbjct: 72  NPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANR 131

Query: 148 CFKYLNQSVLECRYLTVER 166
           C + L+ SVL+ R +TVE+
Sbjct: 132 CIRSLDHSVLQGRVITVEK 150


>AT1G07350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2258816-2259586 REVERSE LENGTH=129
          Length = 129

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N GN+LYVTGLS RVTERDLE+HFAKEGKV    LV++P TR SRGF FI+M +V  ANR
Sbjct: 42  NPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANR 101

Query: 148 CFKYLNQSVLECRYLTVER 166
           C + L+ SVL+ R +TVE+
Sbjct: 102 CIRSLDHSVLQGRVITVEK 120


>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
           chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 86  DRNGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVA 145
           D++ G+ LYV  L   VT+  L EHFA  G + SC ++ +P + +SRG  F+   T E A
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEA 380

Query: 146 NRCFKYLNQSVLECRYLTV 164
            R    +N  ++  + L V
Sbjct: 381 TRAITEMNGKMIVTKPLYV 399


>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
           chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 86  DRNGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVA 145
           D++ G+ LYV  L   VT+  L EHFA  G + SC ++ +P + +SRG  F+   T E A
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEA 380

Query: 146 NRCFKYLNQSVLECRYLTV 164
            R    +N  ++  + L V
Sbjct: 381 TRAITEMNGKMIVTKPLYV 399


>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
           | chr1:6415226-6416283 FORWARD LENGTH=155
          Length = 155

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 93  LYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRCFKYL 152
           ++V GLS       L+E F   GK+    +V++  + +SRGF F+T D++EVAN   + +
Sbjct: 38  IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97

Query: 153 NQSVLECRYLTVE 165
               L+ R + V 
Sbjct: 98  QNKELDGRIIGVH 110


>AT5G04280.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein with retrovirus zinc finger-like domain |
           chr5:1192461-1195413 FORWARD LENGTH=310
          Length = 310

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query: 90  GNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRCF 149
           G+ ++V GLS  VT+RDLE  F++ G +  C +++E  T  SRGF FIT       +   
Sbjct: 6   GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65

Query: 150 KYLNQSVLECRYLTVER 166
           + ++      R ++V R
Sbjct: 66  REMHGRDFGDRVISVNR 82


>AT2G21440.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:9173712-9179065 REVERSE LENGTH=1003
          Length = 1003

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%)

Query: 92  TLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRCFKY 151
           T+ V+GL   +T   LEE F++ G V  CFLV    +   RGFAF+     E  NR  + 
Sbjct: 21  TVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIEL 80

Query: 152 LNQSVLECRYLTVER 166
            N S +  R +TV++
Sbjct: 81  KNGSTVGGRRITVKQ 95


>AT1G60650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein with retrovirus zinc finger-like domain |
           chr1:22340089-22342148 FORWARD LENGTH=292
          Length = 292

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 88  NGGN---TLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEV 144
           N GN    ++V GLS  VTER LE  F + GK+  C ++V   T   RGF FIT      
Sbjct: 6   NDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG 65

Query: 145 ANRCFKYLNQSVLECRYLTVER 166
           A+   K+++   L  + ++V +
Sbjct: 66  ADDAIKHMHGRELGNKVISVNK 87


>AT1G60650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein with retrovirus zinc finger-like domain |
           chr1:22340089-22342148 FORWARD LENGTH=292
          Length = 292

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 88  NGGN---TLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEV 144
           N GN    ++V GLS  VTER LE  F + GK+  C ++V   T   RGF FIT      
Sbjct: 6   NDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRG 65

Query: 145 ANRCFKYLNQSVLECRYLTVER 166
           A+   K+++   L  + ++V +
Sbjct: 66  ADDAIKHMHGRELGNKVISVNK 87


>AT4G19610.1 | Symbols:  | nucleotide binding;nucleic acid
           binding;RNA binding | chr4:10677482-10681623 FORWARD
           LENGTH=816
          Length = 816

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 93  LYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRCFKYL 152
           L+V  L    TE +L EHF+  GK++   LV++  T+ SRG A+I     E A R  + L
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355

Query: 153 NQSVLECRYLTV 164
           + S  + R L +
Sbjct: 356 DNSSFQGRLLHI 367