Miyakogusa Predicted Gene
- Lj0g3v0101609.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0101609.1 Non Chatacterized Hit- tr|D5A836|D5A836_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,41.01,2e-16,seg,NULL,NODE_43686_length_810_cov_55.812347.path2.1
(149 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04555.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 142 1e-34
AT4G33380.1 | Symbols: | unknown protein; Has 194 Blast hits to... 50 8e-07
>AT1G04555.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G33380.1);
Has 84 Blast hits to 83 proteins in 15 species: Archae -
0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:1242743-1243949 FORWARD LENGTH=152
Length = 152
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 98/144 (68%), Gaps = 1/144 (0%)
Query: 7 WRLRFSFRSATMVVCFLNIVTAIFLLHGFLASSYTRNKLSTANS-NSAQLSYIKESEEIR 65
WR+RFSF++AT+ + +N++ +FLL GF SS + + S++ SAQL YIKE+EE+R
Sbjct: 5 WRMRFSFKNATIALTVINVLIFLFLLQGFFTSSSSPSSSSSSRRLISAQLRYIKEAEELR 64
Query: 66 LAMLPLELIKRVREIEQEVYSEPEXXXXXXXXXXXXVDLSKRLKDLRSLNLRTFLSPLEE 125
L M PLELI+RVREIEQE + E VDLSKRLKD R+LN + L LEE
Sbjct: 65 LKMQPLELIRRVREIEQEASAGQETEQQKDVKQTTAVDLSKRLKDFRALNDASSLKALEE 124
Query: 126 WRKRKMERARQRQLEKNGTTSSQT 149
WRKRKMERARQR LEK G SS T
Sbjct: 125 WRKRKMERARQRDLEKTGGVSSST 148
>AT4G33380.1 | Symbols: | unknown protein; Has 194 Blast hits to
189 proteins in 23 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
Eukaryotes - 10 (source: NCBI BLink). |
chr4:16072064-16074605 FORWARD LENGTH=328
Length = 328
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 11 FSFRSATMVVCFLNIVTAIFLLHGFLASS---YTRNKLSTANSNSAQLSYIKESEEIRLA 67
SF+ T++VCF NI+ A+F+L ASS Y+ N + + ++ ++ES IR +
Sbjct: 18 LSFKRITLLVCFFNILIALFVLRFLYASSLHIYSNND-NVVKYTADEIRKMEESIRIRRS 76
Query: 68 MLPLELIKRVREIEQEVYSEPEXXXXXXXXXXXXVD-LSKRLKDLRS-LNLRTFLSPLEE 125
P +++ V++++ EV + VD + +RLK N+ +E
Sbjct: 77 KEPTLILQLVKKLKHEVSTAESSTELSPNVKHKLVDEILQRLKSFEDKSNVTQLREVVET 136
Query: 126 WRKRKMERARQRQLEKNGTTSS 147
WR K+E A++ +NG S+
Sbjct: 137 WRNEKLEEAKELIQGQNGVNST 158