Miyakogusa Predicted Gene
- Lj0g3v0101539.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0101539.1 Non Chatacterized Hit- tr|I1MW66|I1MW66_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.27788
PE,85.45,0,Ribonuclease H-like,Ribonuclease H-like domain; no
description,NULL; DNA_pol_A_exo1,3'-5' exonucleas,CUFF.5705.1
(228 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 360 e-100
AT1G54440.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 332 1e-91
AT1G54440.2 | Symbols: | Polynucleotidyl transferase, ribonucle... 332 1e-91
AT2G32415.2 | Symbols: | Polynucleotidyl transferase, ribonucle... 119 2e-27
AT2G32415.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 119 2e-27
>AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr5:14029871-14035405
REVERSE LENGTH=870
Length = 870
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 164/211 (77%), Positives = 187/211 (88%)
Query: 18 TTGPKPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQRSEDGDRFIHPLEKIFVLDFV 77
+ K KVPFH+PTI++PQ+EYNILVNN N+PFEHVWL+RSED R +HPLEK VLDFV
Sbjct: 181 NSSGKAKVPFHVPTIKKPQEEYNILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFV 240
Query: 78 DKDPGDVLPKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCL 137
DKD ++ P KP P+E TPFK V+EVKDLK+L AKLRSV+EFAVDLEHNQYRSFQGLTCL
Sbjct: 241 DKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCL 300
Query: 138 MQISTRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLF 197
MQISTRTED++VDT KLRIHIGPYLRE+FKDP K+KVMHGADRDI+WLQRDFGIY+CNLF
Sbjct: 301 MQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLF 360
Query: 198 DTGQASKVLKLDRNSLEYLLHHFVEVTANKE 228
DTGQAS+VL L+RNSLE+LL HF VTANKE
Sbjct: 361 DTGQASRVLNLERNSLEFLLQHFCGVTANKE 391
>AT1G54440.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr1:20323284-20327931
FORWARD LENGTH=637
Length = 637
Score = 332 bits (852), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 153/207 (73%), Positives = 183/207 (88%)
Query: 22 KPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQRSEDGDRFIHPLEKIFVLDFVDKDP 81
K +VPFHIPT+ +PQ+EY ILV+N N PFEHV L++SEDG RFIHPLE++ V+DFVD++
Sbjct: 40 KAEVPFHIPTLTKPQEEYKILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNL 99
Query: 82 GDVLPKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLMQIS 141
++ P KP P+E TPFKLVEEVKDL+DLAA L+SV+EFAVDLEHNQYR+FQGLTCLMQIS
Sbjct: 100 SEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQIS 159
Query: 142 TRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFDTGQ 201
TRTED++VD KL HIGPYLRE+FKDP K+KV+HGADRDI+WLQRDFGIY+CNLFDTGQ
Sbjct: 160 TRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQ 219
Query: 202 ASKVLKLDRNSLEYLLHHFVEVTANKE 228
AS+VLKL+RNSLE+LL H+ V ANKE
Sbjct: 220 ASRVLKLERNSLEFLLKHYCGVAANKE 246
>AT1G54440.2 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr1:20323284-20327931
FORWARD LENGTH=639
Length = 639
Score = 332 bits (851), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 153/207 (73%), Positives = 183/207 (88%)
Query: 22 KPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQRSEDGDRFIHPLEKIFVLDFVDKDP 81
K +VPFHIPT+ +PQ+EY ILV+N N PFEHV L++SEDG RFIHPLE++ V+DFVD++
Sbjct: 40 KAEVPFHIPTLTKPQEEYKILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNL 99
Query: 82 GDVLPKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLMQIS 141
++ P KP P+E TPFKLVEEVKDL+DLAA L+SV+EFAVDLEHNQYR+FQGLTCLMQIS
Sbjct: 100 SEMRPVKPLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQIS 159
Query: 142 TRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFDTGQ 201
TRTED++VD KL HIGPYLRE+FKDP K+KV+HGADRDI+WLQRDFGIY+CNLFDTGQ
Sbjct: 160 TRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQ 219
Query: 202 ASKVLKLDRNSLEYLLHHFVEVTANKE 228
AS+VLKL+RNSLE+LL H+ V ANKE
Sbjct: 220 ASRVLKLERNSLEFLLKHYCGVAANKE 246
>AT2G32415.2 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr2:13761386-13765421
REVERSE LENGTH=872
Length = 872
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
Query: 94 STPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLK 153
S + VE LK+LA L FAVD E + RSF G T L+QIST EDF+VDT+
Sbjct: 116 SDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIA 175
Query: 154 LRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFDTGQASKVLKLDRNSL 213
L + LR VF DP KV HGAD D++WLQRDF IY+ N+FDT +A +VL + SL
Sbjct: 176 LH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSL 234
Query: 214 EYLLHHFVEVTANK 227
YLL V NK
Sbjct: 235 AYLLETVCGVATNK 248
>AT2G32415.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr2:13761307-13765421
REVERSE LENGTH=891
Length = 891
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
Query: 94 STPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLK 153
S + VE LK+LA L FAVD E + RSF G T L+QIST EDF+VDT+
Sbjct: 116 SDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIA 175
Query: 154 LRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFDTGQASKVLKLDRNSL 213
L + LR VF DP KV HGAD D++WLQRDF IY+ N+FDT +A +VL + SL
Sbjct: 176 LH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSL 234
Query: 214 EYLLHHFVEVTANK 227
YLL V NK
Sbjct: 235 AYLLETVCGVATNK 248